Sequence 1: | NP_611499.3 | Gene: | rig / 37335 | FlyBaseID: | FBgn0250850 | Length: | 1235 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_056280.2 | Gene: | GEMIN5 / 25929 | HGNCID: | 20043 | Length: | 1508 | Species: | Homo sapiens |
Alignment Length: | 1341 | Identity: | 264/1341 - (19%) |
---|---|---|---|
Similarity: | 447/1341 - (33%) | Gaps: | 483/1341 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 11 PTPPGNVSLAAAAPDGGLL-YAGIRCINYISAPPANGEQP---------QVVTMSTRINILALDV 65
Fly 66 SPMWGLGNGGPTKPFAIVGDDLSVQVWDCALGEAVIGHKAHQHQHEARDVRVVHHTTNSVLMSYL 130
Fly 131 ANGNILSMDASDLVIYCVASNTYCRRSTFISPRNHQLTMVRCSPYNDNLFAVGTAMGNVLVCDL- 194
Fly 195 RKMNIVYKFHGHKAPICGLAWREVPAAEDEKTNNLALSAEEWRSRNGGQ-EEKPKTKPPPL-TKS 257
Fly 258 KAAESDDPFDIYNFDH------LEYEFGAPIAERRRKSSEDCGGEFVGLEKPAGAAVLDFVEACE 316
Fly 317 SVKAELLASRQEDKTQHVEVTLH--DCEPTKPTGPLSDASTISNKNDASDSTEGSLEVIQYSSSS 379
Fly 380 DDAVIVDGEAAKPKREVLHHIYHQAEVHASGTPQTKSEPQSNLQVVPAISAETISLTSVNSTHLE 444
Fly 445 TLLVSIDGDEVMMIWNTN----------TGAHAGKNYSKSKTAGKLNNVYWLNNHVIVSLSRHQL 499
Fly 500 FFWSVEFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYG 564
Fly 565 TVAFGVRAMAECPDDMNKIALGCSDRRVAFFDISKLTTSCLPIDSVY--------VSSNVYCLAW 621
Fly 622 SP---NCLELAFGTFDGTVGILDVERMKVKTHLRTPHKKEVYSLVW---------------QDHF 668
Fly 669 IY--------------------FIVNRVLGFFDLRKSKIEPTIVNCISRPSYLSIR----DSFLF 709
Fly 710 VGTDDGLLQIHERDSGMEKSWSPFIRQSALFARY---VTDIAW------CPLDSNKFAVSGNDRS 765
Fly 766 VYVMEFQPTERNWKTL---------------HTFTANTEKASITSMRWSHTQKHLLLTFHIEGKV 815
Fly 816 CLWNCNAPEKPPLTITYH-----CPMWCGMFLPTNENII------MCSGKALSVELIDIKDALEG 869
Fly 870 DEKSICPKVDALLNVKWASKSLTQPYAPVLTAAEKKRQRRDQRKAAAKLEVDVANKDQKKIQESV 934
Fly 935 TAVIDNPTNDKCTQETPVEEMLE---ALSLDKEQNNRSAKECPKCKEQSPDSFTHSRTCLYLTQK 996
Fly 997 ELNKSALEKLAIVLTEDSAKIDKSVLISKLFSSKVMAKELIATELTNLKHSNTKDIAPLCLAMST 1061
Fly 1062 FKLREELEQ-------------------------------HIAN--------------------- 1074
Fly 1075 -----KTLTERHVSLAPSVSFTLWQDCCRAYAKQMEEKGYIMHAATYLFSQGMQSEAIKLFLANE 1134
Fly 1135 YYKEALVHARICLPATDPLIKTVINNWLEHLEGTGNFAAAA 1175 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rig | NP_611499.3 | WD40 | <80..>215 | CDD:295369 | 36/135 (27%) |
WD40 | 80..>215 | CDD:225201 | 36/135 (27%) | ||
WD40 repeat | 116..160 | CDD:293791 | 9/43 (21%) | ||
WD40 repeat | 167..204 | CDD:293791 | 10/37 (27%) | ||
WD40 | 434..821 | CDD:225201 | 91/470 (19%) | ||
WD40 | 446..719 | CDD:295369 | 66/332 (20%) | ||
WD40 | 613..874 | CDD:295369 | 73/337 (22%) | ||
WD40 repeat | 617..654 | CDD:293791 | 15/39 (38%) | ||
WD40 repeat | 659..691 | CDD:293791 | 9/66 (14%) | ||
WD40 repeat | 693..732 | CDD:293791 | 6/42 (14%) | ||
WD40 repeat | 744..785 | CDD:293791 | 13/61 (21%) | ||
WD40 repeat | 793..831 | CDD:293791 | 10/37 (27%) | ||
WD40 repeat | 838..861 | CDD:293791 | 5/28 (18%) | ||
GEMIN5 | NP_056280.2 | Important for interaction with U1 snRNA. /evidence=ECO:0000269|PubMed:19377484 | 1..124 | 28/132 (21%) | |
Interaction with U4 snRNA. /evidence=ECO:0000269|PubMed:27834343, ECO:0000269|PubMed:27881600, ECO:0000269|PubMed:27881601, ECO:0007744|PDB:5GXH, ECO:0007744|PDB:5GXI, ECO:0007744|PDB:5H1K, ECO:0007744|PDB:5H1L | 13..15 | 0/1 (0%) | |||
WD40 | <53..411 | CDD:225201 | 101/582 (17%) | ||
WD40 | 57..408 | CDD:295369 | 101/575 (18%) | ||
WD40 repeat | 68..107 | CDD:293791 | 10/45 (22%) | ||
WD 2 | 107..148 | 11/53 (21%) | |||
WD40 repeat | 112..149 | CDD:293791 | 7/37 (19%) | ||
WD 3 | 150..189 | 12/40 (30%) | |||
WD40 repeat | 154..193 | CDD:293791 | 10/38 (26%) | ||
WD 4 | 193..264 | 22/75 (29%) | |||
WD40 repeat | 228..279 | CDD:293791 | 17/82 (21%) | ||
WD40 | 240..731 | CDD:225201 | 127/739 (17%) | ||
WD 5 | 280..321 | 13/153 (8%) | |||
WD40 repeat | 288..325 | CDD:293791 | 10/137 (7%) | ||
WD40 repeat | 331..377 | CDD:293791 | 13/85 (15%) | ||
WD 6 | 333..374 | 11/70 (16%) | |||
WD40 | 343..668 | CDD:295369 | 81/395 (21%) | ||
WD 7 | 377..417 | 9/56 (16%) | |||
WD40 repeat | 382..422 | CDD:293791 | 9/56 (16%) | ||
WD 8 | 424..464 | 18/41 (44%) | |||
WD40 repeat | 429..468 | CDD:293791 | 16/40 (40%) | ||
WD 9 | 468..509 | 8/40 (20%) | |||
WD40 repeat | 474..538 | CDD:293791 | 8/73 (11%) | ||
WD 10 | 533..573 | 9/58 (16%) | |||
WD40 repeat | 542..575 | CDD:293791 | 6/41 (15%) | ||
WD 11 | 576..622 | 12/52 (23%) | |||
WD40 repeat | 582..636 | CDD:293791 | 12/60 (20%) | ||
WD 12 | 637..677 | 12/42 (29%) | |||
WD40 repeat | 642..679 | CDD:293791 | 10/37 (27%) | ||
WD40 | 673..710 | CDD:197651 | 7/40 (18%) | ||
WD 13 | 680..720 | 9/44 (20%) | |||
WD40 repeat | 685..722 | CDD:293791 | 8/41 (20%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 715..790 | 19/93 (20%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1313..1343 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1389..1428 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 80 | 1.000 | Inparanoid score | I5231 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D283127at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_106770 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR46362 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.970 |