DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and Tep1

DIOPT Version :9

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_033377.1 Gene:Tep1 / 21745 MGIID:109573 Length:2629 Species:Mus musculus


Alignment Length:1057 Identity:186/1057 - (17%)
Similarity:332/1057 - (31%) Gaps:307/1057 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SAPPA-----NGEQPQVVTMSTRINILALD--------VSPMWGLGNGGPTKPFAIVGD------ 85
            |:|.|     ||::..|.|.|..|.:|.|.        ||...|:.:      ||.:.|      
Mouse  1684 SSPTAVAFSPNGQRAAVGTASGTIYLLNLKTWQEEKAVVSGCDGISS------FAFLSDTALFLT 1742

  Fly    86 --DLSVQVWDCALGEAVIGHKAHQHQHEARDVRVVHHTTNSVLMSYLANGNILSMDASDLVIYCV 148
              |..:::||...|..|...||||:|                     ..|..||.|...|...|:
Mouse  1743 TFDGHLELWDLQHGCWVFQTKAHQYQ---------------------ITGCCLSPDRRLLATVCL 1786

  Fly   149 AS-----NTYCRRSTFISPRNHQLTMVRCSPYNDNLFAVGTAMGNVLVCDLRKMNIVYKFHGHKA 208
            ..     :|...:..|.......|..|...| ...:.|.|:..|::.......:.:..:......
Mouse  1787 GGYLKLWDTVRGQLAFQYTHPKSLNCVAFHP-EGQVVATGSWAGSITFFQADGLKVTKELGAPGP 1850

  Fly   209 PICGLAWREVPAAEDEKTNNLALSAEEWRSRNGGQEEKPKTKPPPLTKSKAAESDDPFDIYNFDH 273
            .:|.||:                                 .||..:.  .....|...:::    
Mouse  1851 SVCSLAF---------------------------------NKPGKIV--AVGRIDGTVELW---- 1876

  Fly   274 LEYEFGAPIAERRRKSSEDCGGEFVGLEKPAGAAVLDFVEACESVKAELLASRQEDKTQHVEVTL 338
             .::.||.:|    .....||.....|...||..   |:.|.|..||:|.:...           
Mouse  1877 -AWQEGARLA----AFPAQCGCVSAVLFLHAGDR---FLTAGEDGKAQLWSGFL----------- 1922

  Fly   339 HDCEPTKPTG-----PLSDASTISNKND----ASDSTEGSLEVIQYSSSSDDAVIVDGEAAKPKR 394
                 .:|.|     |||.|.:::...|    |....|..:.:.:.||.|..          |:.
Mouse  1923 -----GRPRGCLGSLPLSPALSVALNPDGDQVAVGYREDGINIYKISSGSQG----------PQH 1972

  Fly   395 EVLH-----HIYHQAEVHASGTP-------QTKSEPQSNLQVVPAISAETISLTSVNSTHLETLL 447
            :.|:     .::....|..||..       ..|.:...:|.::.......:.|.:...     |:
Mouse  1973 QELNVAVSALVWLSPSVLVSGAEDGSLHGWMFKGDSLHSLWLLSRYQKPVLGLAASRE-----LM 2032

  Fly   448 VSIDGDEVMMIWN----TNTGAHAGKNYSKSKTAGKLNNV----YWLNNHVIVSLSR-HQLFFWS 503
            .:...|..:.:|.    |....||.:....::..|....|    :..:..::.:..| ..|..|.
Mouse  2033 AAASEDFTVRLWPRQLLTQPHVHAVELPCCAELRGHEGPVCCCSFSPDGGILATAGRDRNLLCWD 2097

  Fly   504 VEF-ERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWL-CRNNRQIGMMNPKTGRMADFYGTV 566
            ::. :..:|.:..|     ||| :|.:: .|..:|:.|.: |.::..:|:.||:.|:....:...
Mouse  2098 MKIAQAPLLIHTFS-----SCH-RDWIT-GCAWTKDNILVSCSSDGSVGLWNPEAGQQLGQFSGH 2155

  Fly   567 AFGVRAMAECPDDMNKIALGCSDRRVAFFDISKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAFG 631
            ...|.|:....:.:..::   .|..:..:|...:..:.:|..|..:|.   |.|    .||...|
Mouse  2156 QSAVSAVVAVEEHIVSVS---RDGTLKVWDHQGVELTSIPAHSGPISQ---CAA----ALEPRPG 2210

  Fly   632 TFDG------TVGILDVERMKVKTHLRTPHKKEVYSLVWQDHFIYFIVNRVLGFFDLRKSKIEPT 690
            ...|      |||:....::                  |  |.:.....|.|      :....|.
Mouse  2211 GQPGSELLVVTVGLDGATKL------------------W--HPLLVCQIRTL------QGHSGPV 2249

  Fly   691 IVNCISRPSYLSIRDSFLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFARYVTDIAWCPLDSN 755
            .....|..       |.|.:.:||..:|:.:.....:.|:.|  |.|..    :|.:||.|  ..
Mouse  2250 TAAAASEA-------SGLLLTSDDSSVQLWQIPKEADDSYKP--RSSVA----ITAVAWAP--DG 2299

  Fly   756 KFAVSGNDRSVYVMEFQPTERNWKTLHTFTANTEKASITSMRWSHTQKHLLLTFHIEGKVCLWNC 820
            ...||||:.....:        |:.............::.:.|.......:|:  ....|..|..
Mouse  2300 SMVVSGNEAGELTL--------WQQAKAVATAQAPGRVSHLIWYSANSFFVLS--ANENVSEWQV 2354

  Fly   821 NAPEKPPLT-ITYHCPM-----W---CGMFL-PTNENIIMCSGKALSVELIDIKDALEGDEKSIC 875
            ...:....| .:.|...     |   .|:.| |..:::|:...   .|||:::|..  ....|||
Mouse  2355 GLRKGSTSTSSSLHLKRVLQEDWGVLTGLGLAPDGQSLILMKE---DVELLEMKPG--SIPSSIC 2414

  Fly   876 PKVDALLNVKWASKS-----LTQPYAPVLTAAEKKRQRR---------------------DQRKA 914
            .:.....::...||.     |.|..:.:|:..|:|....                     .|.|.
Mouse  2415 RRYGVHSSILCTSKEYGLFYLQQGDSGLLSILEQKESGEFEEILDFNLNLNNPNGSPVSITQAKP 2479

  Fly   915 AAKLEVDVANKD---------------------QKKIQESVTAVIDNPTNDKCTQETPVEEMLEA 958
            .::..:..|..|                     |||.::..|..::       |:.:|..|:..:
Mouse  2480 ESESSLLCATSDGMLWNLSECTSEGEWIVDNIWQKKAKKPKTQTLE-------TELSPHSELDFS 2537

  Fly   959 LSLDKEQNNRSAKECPK 975
            :....:..|..|::|.|
Mouse  2538 IDCWIDPTNLKAQQCKK 2554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 <80..>215 CDD:295369 29/147 (20%)
WD40 80..>215 CDD:225201 29/147 (20%)
WD40 repeat 116..160 CDD:293791 7/48 (15%)
WD40 repeat 167..204 CDD:293791 6/36 (17%)
WD40 434..821 CDD:225201 70/403 (17%)
WD40 446..719 CDD:295369 51/289 (18%)
WD40 613..874 CDD:295369 49/276 (18%)
WD40 repeat 617..654 CDD:293791 9/42 (21%)
WD40 repeat 659..691 CDD:293791 5/31 (16%)
WD40 repeat 693..732 CDD:293791 7/38 (18%)
WD40 repeat 744..785 CDD:293791 9/40 (23%)
WD40 repeat 793..831 CDD:293791 5/38 (13%)
WD40 repeat 838..861 CDD:293791 6/23 (26%)
Tep1NP_033377.1 TEP1 N-terminal 1 1..30
TEP1_N 1..29 CDD:283129
TEP1 N-terminal 2 31..60
TEP1_N 31..59 CDD:283129
TEP1 N-terminal 3 61..90
TEP1_N 62..89 CDD:283129
TEP1 N-terminal 4 91..120
TEP1_N 91..119 CDD:283129
TROVE 230..685 CDD:283406
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 386..412
DUF4062 917..1017 CDD:290011
NACHT 1171..1346 CDD:283404
WD 1 1420..1462
WD 2 1681..1720 11/35 (31%)
WD40 repeat 1687..1723 CDD:293791 9/35 (26%)
WD 3 1723..1761 10/43 (23%)
WD40 repeat 1729..1764 CDD:293791 8/40 (20%)
WD40 1763..2182 CDD:238121 87/528 (16%)
WD 4 1764..1803 11/59 (19%)
WD40 repeat 1769..1804 CDD:293791 8/34 (24%)
WD 5 1805..1844 6/39 (15%)
WD40 1806..2198 CDD:225201 77/480 (16%)
WD40 repeat 1811..1847 CDD:293791 5/36 (14%)
WD 6 1847..1886 9/82 (11%)
WD40 repeat 1852..1887 CDD:293791 9/78 (12%)
WD 7 1889..1930 13/59 (22%)
WD40 repeat 1895..1930 CDD:293791 11/53 (21%)
WD 8 1932..1971 10/48 (21%)
WD40 repeat 1937..2066 CDD:293791 21/143 (15%)
WD 9 1974..2013 5/38 (13%)
WD40 1979..2273 CDD:238121 58/348 (17%)
WD40 repeat 1979..2014 CDD:293791 5/34 (15%)
WD 10 2015..2054 5/43 (12%)
WD 11 2067..2106 5/38 (13%)
WD40 repeat 2072..2111 CDD:293791 5/38 (13%)
WD 12 2113..2151 11/39 (28%)
WD40 repeat 2118..2141 CDD:293791 5/23 (22%)
WD 13 2154..2191 4/39 (10%)
WD40 repeat 2159..2190 CDD:293791 4/33 (12%)
WD 14 2193..2241 13/74 (18%)
WD40 repeat 2198..2243 CDD:293791 14/77 (18%)
WD 15 2244..2282 7/44 (16%)
WD40 repeat 2250..2272 CDD:293791 6/28 (21%)
WD 16 2285..2324 11/52 (21%)
WD40 repeat 2290..2322 CDD:293791 9/41 (22%)
WD 17 2326..2362 4/37 (11%)
WD40 repeat 2330..2374 CDD:293791 6/45 (13%)
WD 18 2375..2424 12/53 (23%)
WD40 repeat 2380..2410 CDD:293791 8/34 (24%)
WD40 2408..>2625 CDD:225201 25/154 (16%)
WD40 repeat 2420..2465 CDD:293791 7/44 (16%)
WD 19 2467..2507 4/39 (10%)
WD40 repeat 2472..2495 CDD:293791 4/22 (18%)
WD40 <2534..>2602 CDD:295369 4/21 (19%)
WD 20 2555..2592 186/1057 (18%)
WD 21 2594..2628
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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