| Sequence 1: | NP_611499.3 | Gene: | rig / 37335 | FlyBaseID: | FBgn0250850 | Length: | 1235 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001160141.1 | Gene: | Gemin5 / 216766 | MGIID: | 2449311 | Length: | 1503 | Species: | Mus musculus |
| Alignment Length: | 1337 | Identity: | 266/1337 - (19%) |
|---|---|---|---|
| Similarity: | 438/1337 - (32%) | Gaps: | 476/1337 - (35%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 11 PTPPGNVSLAAAAPDGGLLYAGIRCINYISAPPANGEQPQVVTMSTRINILALDVSPMWGLGNGG 75
Fly 76 PTKPFAIVG----------------------------DDLSVQVWDCALGEAVIGHKAHQHQHEA 112
Fly 113 RDVRVVHHTTNSVLMSYLANGNILSMDASDLVIYCVASNTYCRRSTFISPRNHQLTMVRCSPYND 177
Fly 178 NLFAVGTAMGNVLVCDL-RKMNIVYKFHGHKAPICGLAWREVPAAEDEKTNNLALSAEEWRSRNG 241
Fly 242 GQEEKPKTKPPPLTKSKAAESDDPFDIYNFDHLEYEFGAPIAERRRKSSEDCGGEFVGLEKPAGA 306
Fly 307 AVLDFVEACESVKAELLASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTISNKNDASDSTEGSLE 371
Fly 372 VIQYSSSSDDAVIVDGEAAKPKREVLHHIYHQAEVHASGTPQTKSEPQSNLQVVPAISAETISLT 436
Fly 437 SVNSTHLETLLVSIDGDEVMMIWNTNTGAHA---GKNYSKSKTAG---KLNNVYWLNNH------ 489
Fly 490 --VIVSLSRHQLFFWSV--EFERKMLRYKISKD-KSHSCHLQDIVSFACDSSKEMIWLCRNNRQI 549
Fly 550 GMMNPKT-------GRMADFYGTVAFGVRAMAECPDDMNKIALGCSDRRVAFFDISKLTTSCLPI 607
Fly 608 DSVY--------VSSNVYCLAWSPN---CLELAFGTFDGTVGILDVERMKVKTHLRTPHKKEVYS 661
Fly 662 LVWQDHFIYFIVNRVLGFFDLRKSKIEPTIVNC-------ISRPSYLS---------IRDS---- 706
Fly 707 ----------------FLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFARY---VTDIAW--- 749
Fly 750 ---CPLDSNKFAVSGNDRSVY------VMEFQP------TERNWKTL--HTFTANTEKASITSMR 797
Fly 798 WSHTQKHLLLTFHIEGKVCLWNCNAPEKPPLTITYH-----CPMWCGMFLPTNENIIMCSGKALS 857
Fly 858 VE--LIDIKDALEGDEKSICPKVDALLNVKWASKSLTQPYAPVLTAAEKKRQRRDQRKAAAKLEV 920
Fly 921 DVANKDQKKIQESVTAVIDNPTNDK-----------------------CT------QETPVEEML 956
Fly 957 EALSLDKEQNNRSAKECPKC--KEQSPDSFTHSRTCL-YLTQKELNKSALEKLAIVLTEDSAKID 1018
Fly 1019 KSVLISK---------LFSSKVMAKELIATE-LTNLKHSNTKDIAPLCLAMSTFKLREELEQHIA 1073
Fly 1074 NKTLTERHVSLAPSVSFTLWQDCCRAYAKQMEEKGYIMHAATYLFSQGMQSEAIKLFLANEYYKE 1138
Fly 1139 ALVHARICLPATDPLIKTVINNWLEHLEGTGNFAAAA 1175 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| rig | NP_611499.3 | WD40 | <80..>215 | CDD:295369 | 39/163 (24%) |
| WD40 | 80..>215 | CDD:225201 | 39/163 (24%) | ||
| WD40 repeat | 116..160 | CDD:293791 | 9/43 (21%) | ||
| WD40 repeat | 167..204 | CDD:293791 | 11/37 (30%) | ||
| WD40 | 434..821 | CDD:225201 | 104/480 (22%) | ||
| WD40 | 446..719 | CDD:295369 | 75/343 (22%) | ||
| WD40 | 613..874 | CDD:295369 | 80/329 (24%) | ||
| WD40 repeat | 617..654 | CDD:293791 | 16/39 (41%) | ||
| WD40 repeat | 659..691 | CDD:293791 | 8/31 (26%) | ||
| WD40 repeat | 693..732 | CDD:293791 | 11/74 (15%) | ||
| WD40 repeat | 744..785 | CDD:293791 | 17/60 (28%) | ||
| WD40 repeat | 793..831 | CDD:293791 | 10/37 (27%) | ||
| WD40 repeat | 838..861 | CDD:293791 | 3/24 (13%) | ||
| Gemin5 | NP_001160141.1 | Important for interaction with U1 snRNA. /evidence=ECO:0000250|UniProtKB:Q8TEQ6 | 1..124 | 29/150 (19%) | |
| Interaction with U4 snRNA. /evidence=ECO:0000250|UniProtKB:Q8TEQ6 | 13..15 | 0/1 (0%) | |||
| WD40 | <53..411 | CDD:225201 | 89/579 (15%) | ||
| WD40 | 57..408 | CDD:295369 | 87/572 (15%) | ||
| WD40 repeat | 68..107 | CDD:293791 | 8/38 (21%) | ||
| WD 2 | 107..148 | 11/53 (21%) | |||
| WD40 repeat | 112..149 | CDD:293791 | 7/37 (19%) | ||
| WD 3 | 150..189 | 13/40 (33%) | |||
| WD40 repeat | 154..193 | CDD:293791 | 11/38 (29%) | ||
| WD 4 | 193..264 | 27/263 (10%) | |||
| WD40 repeat | 199..269 | CDD:293791 | 24/262 (9%) | ||
| WD 5 | 280..321 | 7/40 (18%) | |||
| WD40 | 287..710 | CDD:225201 | 104/467 (22%) | ||
| WD40 repeat | 287..329 | CDD:293791 | 8/41 (20%) | ||
| WD40 | 329..668 | CDD:295369 | 87/378 (23%) | ||
| WD 6 | 333..374 | 6/40 (15%) | |||
| WD40 repeat | 336..374 | CDD:293791 | 4/37 (11%) | ||
| WD 7 | 377..417 | 10/53 (19%) | |||
| WD40 repeat | 382..422 | CDD:293791 | 10/53 (19%) | ||
| WD 8 | 424..464 | 19/41 (46%) | |||
| WD40 repeat | 429..454 | CDD:293791 | 15/26 (58%) | ||
| WD 9 | 468..509 | 13/47 (28%) | |||
| WD40 repeat | 473..521 | CDD:293791 | 13/54 (24%) | ||
| WD40 repeat | 529..636 | CDD:293791 | 21/116 (18%) | ||
| WD 10 | 533..573 | 7/48 (15%) | |||
| WD 11 | 576..622 | 10/45 (22%) | |||
| WD40 | 631..>710 | CDD:295369 | 21/90 (23%) | ||
| WD 12 | 637..677 | 13/47 (28%) | |||
| WD40 repeat | 642..667 | CDD:293791 | 7/24 (29%) | ||
| WD 13 | 680..720 | 8/43 (19%) | |||
| WD40 repeat | 685..710 | CDD:293791 | 5/28 (18%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 740..797 | 10/63 (16%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 819..838 | 9/22 (41%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1309..1338 | ||||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 1 | 1.050 | 91 | 1.000 | Inparanoid score | I5093 |
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D326439at33208 | |
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 1 | 1.000 | - | - | oto95397 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_106770 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR46362 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 7 | 6.970 | |||||