DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rig and rbc-2

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001368042.1 Gene:rbc-2 / 190267 WormBaseID:WBGene00004314 Length:1373 Species:Caenorhabditis elegans


Alignment Length:1089 Identity:203/1089 - (18%)
Similarity:346/1089 - (31%) Gaps:381/1089 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   380 DDAVIVDG------------EAAKPKREVLHHIYHQAEVHASGTPQTKSEPQSNLQVVPAISAET 432
            |.|.|:.|            |...||:.::.|                      .|.:.|||..|
 Worm    38 DGATIITGAENGHIIIWKLAEGLMPKQLMIGH----------------------SQKITAISQTT 80

  Fly   433 ISLTSVNSTHLETLLVSIDGDEVMMIWNTNTGAHAGKNYS------------KSKTAGKLNNVYW 485
                   :|...|..||...|..:.:|....|.......|            ||....:...::.
 Worm    81 -------NTPTNTRFVSASADGRVCLWEIQDGRCIDSTSSIAIHRYIYPYTYKSSRHTRATRLFC 138

  Fly   486 LNNH------------VIVSLS-------------------RHQLF---------FWSV-EFERK 509
            :.::            |:.|:|                   ..||.         .|:: |.|:|
 Worm   139 IGDYSDIQVMDPQDLTVVFSISSRVEPDWISCFTIISHPEKEDQLIGMTLSGMMKVWTLTELEKK 203

  Fly   510 MLRYKISKDKSHSCHLQDI--VSFACDSSKEMI------WLCRNNRQIGMMNPKTGRMADFYGTV 566
            .....:.:|:|....:|.|  ||:.|.:.:.::      |:.     |.|         |...||
 Worm   204 DPATSLYEDESKRLEIQHIRSVSYICSTRRMLLIIASTCWMI-----IDM---------DDLSTV 254

  Fly   567 AF------GVRAMAECPDDMNKIALGCSDRRVAFFDISKLTTSCLPIDSV--------------- 610
            .|      ..|.:|....|::|:.:|.:|..:..|.        |||:|:               
 Worm   255 VFHKNEITTKRCVAGYLTDLDKVTIGYTDESIHVFQ--------LPIESLQKEGVPPVVANNRPT 311

  Fly   611 ---YVSSNVYCLA-------WSPNCL---ELAF------GTFDGTVGILDVERMKVKTHLRTPHK 656
               :...|.:.:|       .|.:||   :.||      .:.:.:....:..|..|....|    
 Worm   312 SNYFDQPNPFIVATVNGVQEHSRSCLNDVQFAFLPYNSSNSLESSSSSYEKRRFSVVRSSR---- 372

  Fly   657 KEVYSLVWQDHFIYFIVNRVLGFFDLRKSKIEPTIVNCISRPSYLSIRDSFLFVGT-DDGLLQIH 720
            ::...|||.           :..||.:..|..|.|.|.           .|.|.|| .:.|..|.
 Worm   373 RDGSVLVWN-----------MPPFDHQFMKAVPAIRNL-----------PFKFNGTYRESLASIW 415

  Fly   721 ERDSGMEKSWSPFIRQSALFARYVTDIAWCPLDSNKFAVS------GNDRSVYVMEF--QPTERN 777
            :..:..|....|.:.         :|...|.|    |..|      |....|.||.:  :...|.
 Worm   416 QTINECEDGSMPVLN---------SDAVCCSL----FVTSQGKLFLGRSDGVIVMTYACETLARQ 467

  Fly   778 WKTLHTFTANT-----EKASITSM--RWSHTQKHLLLTFHIEG----KVCLWNCNAPEKPPLTIT 831
            |..:....|.:     ..|::.||  .:.|..::....| :.|    .|.:||.|:..:......
 Worm   468 WLRVPAERATSRILTGHDAAVRSMFYPFEHDTRYDPQYF-VSGSDDFSVIVWNINSGTRIHRFTV 531

  Fly   832 YHCPMWCGMFLPTN--ENIIMCSGKAL---SVELIDIKDALEGDEKSICPKVDA-----LLNVKW 886
            :..|:...|..|:|  :.:..|.....   ::.|::|:|       |.|..:.:     ::.|||
 Worm   532 HGGPVKSFMLPPSNCSKQVTKCIASLAADNTIALLNIRD-------SKCMLLASRHPFPIIQVKW 589

  Fly   887 ASKSLTQPYAPVLTAAEKKRQRRDQRKAAAKL--------EVDVANKDQ---KKIQESVTAVIDN 940
                  :|....:               ..||        :::.||.|:   ..:.|.:....|.
 Worm   590 ------RPLDDFM---------------LVKLADGSVYVWQMETANLDRIATGLLAEDIMTACDE 633

  Fly   941 PTN-DKCTQETPVEEMLEALSLDKEQNNRSAKE-----------CPKCKEQ------------SP 981
            ... ::.|.||.....::.:...|.:|..:.|:           .|....:            ||
 Worm   634 QIGVEEGTDETSAHHAVQLIRALKNKNMEAVKQKVVGGSVSGAATPSSHHELPTNCGTAVQLGSP 698

  Fly   982 DSFTHSRTC---LYLTQKELNKSALEKLAIVLTEDSA-----------KIDKSVLISKLFSSKVM 1032
            .|......|   .:|.|.|:  |||  :|.:|..||:           |:|.:.......|:..:
 Worm   699 MSILPLPGCAQGAHLVQFEI--SAL--IAGILHLDSSAEAPEGKTTAQKLDAAAAAGASDSATGL 759

  Fly  1033 AKELIATELTNLKHSNTKDIAPLCLAM-STFKLREELEQHIANKTLT---ERH------VSLAPS 1087
            :::|......||    ..|:|.|.|:| ..:.|.|:::: :.:|.|:   .||      ||....
 Worm   760 SRKLTWQFEANL----YLDVARLMLSMLHAWCLDEDMDE-VCDKRLSLHRPRHQVYFGNVSRQGE 819

  Fly  1088 VSFTL-------WQDCCRAYAKQMEEKGYIMH----AATYLFSQGMQSEAIKLFLANEYYKE--- 1138
            :|.:|       ::..|:....|........|    .||......|::.|::|....:...|   
 Worm   820 LSVSLPTRFAADFESFCKKSRWQASHSLNTSHLLAVIATSNTLMAMKNSALQLAKIRKSVVEQNQ 884

  Fly  1139 ---------------ALVHARICLPATD----------PLIKTVINNW----LEHLEGTGNFAAA 1174
                           :||.|..|:...|          |.|:.::..|    ||..|     ||.
 Worm   885 STIHQPDRQQIKQGWSLVAALHCVLLPDHVRPRSSYAPPSIEMLVRRWQDSCLEIRE-----AAQ 944

  Fly  1175 ALICVLDNEMLRGYSYLRKYRNCTPEIADLMDQIKRIGQLGGVLDGCAP 1223
            ||: :.:...|......|...:.||.:..|:|....|  .|..|....|
 Worm   945 ALL-IRELTRLGAEGRRRLIESWTPFLPPLLDDSLSI--FGSKLQSSVP 990

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 446..719 CDD:475233 66/374 (18%)
WD40 613..874 CDD:475233 57/301 (19%)
WD40 repeat 617..654 CDD:293791 9/52 (17%)
WD40 repeat 659..691 CDD:293791 7/31 (23%)
WD40 repeat 693..732 CDD:293791 8/39 (21%)
WD40 repeat 744..785 CDD:293791 11/48 (23%)
WD40 repeat 793..831 CDD:293791 9/43 (21%)
WD40 repeat 838..861 CDD:293791 4/27 (15%)
rbc-2NP_001368042.1 WD40 27..>118 CDD:475233 21/108 (19%)
WD40 repeat 33..68 CDD:293791 7/29 (24%)
WD40 repeat 73..108 CDD:293791 11/41 (27%)
WD40 repeat 112..160 CDD:293791 5/47 (11%)
WD40 repeat 168..211 CDD:293791 6/42 (14%)
WD40 repeat 264..291 CDD:293791 7/34 (21%)
WD40 373..621 CDD:475233 58/311 (19%)
WD40 repeat 488..530 CDD:293791 9/42 (21%)
WD40 repeat 584..610 CDD:293791 6/46 (13%)
WD40 <1248..>1314 CDD:441893
WD40 repeat 1286..1337 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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