DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rig and gemin5

DIOPT Version :9

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:XP_004912843.1 Gene:gemin5 / 100493267 XenbaseID:XB-GENE-981572 Length:1473 Species:Xenopus tropicalis


Alignment Length:1153 Identity:233/1153 - (20%)
Similarity:400/1153 - (34%) Gaps:346/1153 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 CSPYNDNLFAVGTAMGNVLVCDLRKMNIVYKFHGHKAPICGLAWREVPAAEDEKTNNLALSAEE- 235
            |:..:|:        |.|.|.|.:..|.|.:.|.|::.|..|.|.  |..:|     |.:|.:| 
 Frog    73 CASSSDD--------GTVKVWDTQTKNTVTEHHLHRSTIAALHWS--PLVKD-----LLVSGDEK 122

  Fly   236 ------WRSRNGGQEEKPKTKPPPLTKSKAAESDDPFDIYNFDHLEYEFGAPIAERRRKSSEDCG 294
                  |.:||..|:..|                :|..|:                         
 Frog   123 GVLVCFWCNRNDSQQFFP----------------EPRTIF------------------------- 146

  Fly   295 GEFVGLEKPAGAAVLDFVEACESVKAELLASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTISNK 359
                                |.|                       |.|.|     .|...|..|
 Frog   147 --------------------CLS-----------------------CSPHK-----EDIVAIGYK 163

  Fly   360 NDASDSTEGSLEVIQYSSSSDDAVIVDGEAAKPKREVLHHIY-HQAEVHA-SGTPQTKSEPQSNL 422
                   :|.:.::..|...|               |||.:. |:.|:|. ..:|...   :.:|
 Frog   164 -------DGMIVLVDISRRGD---------------VLHRLRGHEEEIHCLEWSPHAL---ECDL 203

  Fly   423 QVVPAISAETISLTSVNSTHLETL---------LVSIDGDEVMMIWNTNTGAHA---GKNYSKSK 475
            |       :.:..|.:|:.:.|.|         |.|...|:.:.||:.:||...   ...|.|.:
 Frog   204 Q-------QKLEETEINTANGELLPETENRRCYLASGSKDQTVRIWSASTGKAVTVLKLPYLKRR 261

  Fly   476 TAG---KLNNVYWLNNH--------VIVSLSRHQLFFWSV--EFERKMLRYKISKDKSHSCHLQD 527
            ..|   .:....||..|        ::.|....:|..|.:  ..::|......|..::||..:.:
 Frog   262 GGGVDPAIKERLWLTLHWPPGHSTQILSSCFGGELLLWDLTKSGKQKWTLLGTSDGQNHSRIVFN 326

  Fly   528 IVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFG--VRAMAECPDDMNKIALGCSDR 590
            :.|...:..||::.....:|.:...:  .|.::..:...:.|  |.::|..|.....:|:|..|.
 Frog   327 LCSVVTEEGKELLLSTSMDRDVKCWD--LGSLSCCWSLTSLGGFVYSLAFSPVAAGSLAVGVGDS 389

  Fly   591 RVAFFDISKLTTSCLPIDSVY--VSSNVYCLAWSPNCL-ELAFGTFDGTVGILDVERMKVKTHLR 652
            .:..::...: .:...:.:::  :.|.|..|:|.|... .|||||.||.|||.:|...|......
 Frog   390 MIRVWNTMSV-VNAYDVKTLWQGIRSKVTALSWHPTKEGSLAFGTEDGKVGIFEVYISKPPQISA 453

  Fly   653 TPHKKEVYSLVW------------QDHFIYFI-----------------------VNRVLGFFDL 682
            |.|||.||||.|            .|...|.:                       :|:::...:.
 Frog   454 TYHKKTVYSLSWGPLLPPFSFGAEGDRPTYTLYSCGGEGVIYQHNPWKLTDEASNINKLIRDTND 518

  Fly   683 RKSKIEPTIVNCISRPSYLSIRDSFLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFARYVTDI 747
            .|.|: |.......||.     ..:|.:|.:||.:::.....      ...|.......:.|..:
 Frog   519 IKHKL-PAHTELSWRPD-----GQYLAIGNEDGTIEVFHTQR------LQLICTIQQHHKLVNAV 571

  Fly   748 AW------CPLDSNKFAVSG-NDRSVYVMEFQ-----PTE------RNWKTL--HTFTANTEKAS 792
            .|      .| |.|....|| |:.:|||...:     ||:      ..::||  ||       |.
 Frog   572 RWHHGHSQDP-DLNFLLASGSNNATVYVHNLKGPLENPTDSPVTITEPFRTLPGHT-------AK 628

  Fly   793 ITSMRWSHTQKHLLLTFHIEGKVCLWNCNAPEKPPLTITYHCPMWCGMFLPTNENIIMCSGKALS 857
            |||:.||......|::...:|...:|:. ..|:|......|                  .|:.||
 Frog   629 ITSLSWSPHHDARLVSASYDGTAQVWDV-LQEEPLSNYRGH------------------KGRLLS 674

  Fly   858 VELIDIKDALEGDEKSICPKVDALLNVKWA---SKSLTQPYAPVLTAAEKKRQRRDQRKAAAKLE 919
            |:.    ..:|.|:  :....|......|:   .:....|.....|..||||..:.:.||..|.:
 Frog   675 VQW----SPVEPDQ--VWTGADDFCLHSWSVSKQEHSRPPKGKKATELEKKRTLQPKPKAKKKKK 733

  Fly   920 VDVANKDQ-KKIQ--ESVTAVIDNPTNDKCT-QETPVEEMLEALSLDKEQNNRSAKEC------- 973
            :|...::. :::|  |..:.:..|.|:|:.. |.||..|     :.|:..:.... ||       
 Frog   734 LDTPKEEAGREVQRGEKESPLTQNGTSDQEEGQGTPEPE-----AADRGLHEADV-ECPFQPVVP 792

  Fly   974 ---PKCKEQSPDSFTHSRTCLYLTQKELNKSALEKLAIVLTEDSAKIDKSVLISKLFSSK----- 1030
               |...:.||.||..:    ...:|:|.|   |:..:.:.:..::....:..||...||     
 Frog   793 SPVPAQDKHSPISFAKT----VPVRKDLAK---ERADLQIRKKKSRSLLPISTSKDHRSKEEQHR 850

  Fly  1031 ---VMAKELIATELTNLKHSNTKDIAPLCL----AMSTFKLREELEQHIAN-------------- 1074
               .:|..:.|.:|....|.:::|...|.|    |.....:.||.:.|:.|              
 Frog   851 DCVKLATVVCAKDLEEKSHFHSEDTMHLGLYSDRAALYHLMEEEGKAHLENGHPELQHQIMLWKG 915

  Fly  1075 ------------KTLTERHVSLAPSVSFTLWQDCCRAYAKQMEEKGYIMHAATYLFSQGMQSEAI 1127
                        ..||::.|:|:|...:.:|.....|:.||:......:.||::|.|.....||:
 Frog   916 DLKGTLQLAAERGELTDQLVALSPVAGYKVWLWTVEAFVKQLCFHEQYVKAASHLLSINKVYEAV 980

  Fly  1128 KLFLANEYYKEALVHARICLPATDPLIKTVINNWLEHLEGTGNFAAAA 1175
            :|...|..|:||:..|:..|...|.:::.:..:|...||..|:::.||
 Frog   981 ELLKGNHLYREAIAVAKARLLPDDSVLRELYTSWAAVLEQDGHYSMAA 1028

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 <80..>215 CDD:295369 12/42 (29%)
WD40 80..>215 CDD:225201 12/42 (29%)
WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791 8/31 (26%)
WD40 434..821 CDD:225201 101/471 (21%)
WD40 446..719 CDD:295369 71/337 (21%)
WD40 613..874 CDD:295369 74/316 (23%)
WD40 repeat 617..654 CDD:293791 15/37 (41%)
WD40 repeat 659..691 CDD:293791 11/66 (17%)
WD40 repeat 693..732 CDD:293791 6/38 (16%)
WD40 repeat 744..785 CDD:293791 17/60 (28%)
WD40 repeat 793..831 CDD:293791 10/37 (27%)
WD40 repeat 838..861 CDD:293791 4/22 (18%)
gemin5XP_004912843.1 WD40 48..395 CDD:392136 81/459 (18%)
WD40 repeat 58..119 CDD:293791 16/60 (27%)
WD40 repeat 125..184 CDD:293791 21/169 (12%)
WD40 repeat 189..254 CDD:293791 15/74 (20%)
WD40 223..705 CDD:225201 108/529 (20%)
WD40 repeat 275..316 CDD:293791 6/40 (15%)
WD40 repeat 323..361 CDD:293791 5/39 (13%)
WD40 repeat 369..409 CDD:293791 6/40 (15%)
WD40 repeat 416..441 CDD:293791 13/24 (54%)
WD40 repeat 460..495 CDD:293791 7/34 (21%)
WD40 repeat 524..562 CDD:293791 8/48 (17%)
WD40 repeat 568..623 CDD:293791 14/55 (25%)
WD40 repeat 629..654 CDD:293791 7/24 (29%)
WD40 repeat 673..705 CDD:293791 7/37 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 85 1.000 Inparanoid score I5006
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D283127at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46362
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.160

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