DRSC/TRiP Functional Genomics Resources

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Protein Alignment FAM21 and Rcsd1

DIOPT Version :10

Sequence 1:NP_611496.1 Gene:FAM21 / 37331 FlyBaseID:FBgn0034529 Length:1469 Species:Drosophila melanogaster
Sequence 2:XP_006496844.1 Gene:Rcsd1 / 226594 MGIID:2676394 Length:427 Species:Mus musculus


Alignment Length:452 Identity:97/452 - (21%)
Similarity:142/452 - (31%) Gaps:188/452 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   963 LFSDVPPEDNDHAGEEVQKEAEPQKDELASTTRIHTIFYDDFSETARAGAVQPAPKRFPFDDEPP 1027
            ::.:.|.|.|.:    |...|:|...:||...|.|            |...:..|...|...:||
Mouse    15 VYKERPSETNSN----VDSSAQPSVAQLAGRFREH------------AAVARETPASKPTRRKPP 63

  Fly  1028 --------------PADETDRSEVKETPELQKPTSPVKKLKMPNININVHALLPGSG-------- 1070
                          ..:|...|.....|:::..:||:.:....|:..:..|||||:.        
Mouse    64 CSLPLFPPKVELGQNGEEKSPSGASHPPKIKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKA 128

  Fly  1071 ---------SVPKL--IRKQESSSSERDEPQATVQTEAEAPSSGQNTVSSADGVLQHVNKSRARG 1124
                     |.|..  ||...|.:.|       |....:.|..|.:        |...||.|.||
Mouse   129 IVSPFHSPPSTPSSPGIRSHPSEAEE-------VPVSFDQPPEGTH--------LPSYNKVRTRG 178

  Fly  1125 PAKRRPSTRRGRKENYAKSLLDAGQNEGPTASTRDSPEVEHSER-------------SSIKAP-S 1175
            ..||||.:||     :.:|..|.|       ..||...||.|:.             |..|.| |
Mouse   179 SIKRRPPSRR-----FRRSQSDCG-------DFRDYRAVEPSQENGAREENGDDVFASKSKDPGS 231

  Fly  1176 PQY----------------------------VKPEKLFSTP---------------AQQIQPQLQ 1197
            ||.                            .|||:|..||               |.|..|::|
Mouse   232 PQLNQEAMADGVEGTPWSAEKPRRRNTCNSTEKPEELVRTPEEANAGEKVGQNPDTASQGHPEVQ 296

  Fly  1198 RP-----PPSNTG----------GSFLD-----------------------SPD----EDDSFFN 1220
            .|     |.:..|          |...|                       |||    |::....
Mouse   297 APSQTGSPEAENGCGSPREETTPGEHTDTGKATEGTASEERVADEDRLGQKSPDANMPEEEGVVR 361

  Fly  1221 SVPTKTVEGK-QGT-----DPPKSYRSFLD---SPDAD---DKLFSDLENNKA-GINVVPVE 1269
            ....:|..|| :||     |..:...:.|:   ||.||   .::.|:::|.|| .::.:|:|
Mouse   362 EKAPQTSSGKAEGTTIAEPDTKQKEEAPLEPSCSPGADHAAGEITSEIQNEKAVSMDDIPIE 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FAM21NP_611496.1 PHA03307 353..>583 CDD:223039
PHA03307 931..>1207 CDD:223039 74/348 (21%)
CAP-ZIP_m 1045..1163 CDD:464595 34/136 (25%)
Rcsd1XP_006496844.1 CAP-ZIP_m 90..>181 CDD:464595 24/105 (23%)
RCSD 245..330 CDD:428350 15/84 (18%)
Blue background indicates that the domain is not in the aligned region.

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