DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9945 and Wsb1

DIOPT Version :9

Sequence 1:NP_611494.1 Gene:CG9945 / 37329 FlyBaseID:FBgn0034527 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001036026.1 Gene:Wsb1 / 303336 RGDID:1307835 Length:421 Species:Rattus norvegicus


Alignment Length:347 Identity:62/347 - (17%)
Similarity:123/347 - (35%) Gaps:151/347 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 WSIIDADFSPNGEHFAYS---------TWSRSL--FIM-----------------PVNGGED--- 208
            |::.   |:|:|.:||:|         .||:.|  |::                 ..|||:.   
  Rat    38 WTVA---FAPDGSYFAWSQGYRIVKLVPWSQCLKNFLLHGSKNVTNSSCLKLARQNSNGGQKNKP 99

  Fly   209 -----DCQWIDVNGLPSHRLAIFSLRYSPTGDKIIGGSNNSTVIVTDIRTRNTQILRTHRMPGKD 268
                 ||..|           ::||.:         ||:     |.:.::|...| ..||     
  Rat   100 REHIIDCGDI-----------VWSLAF---------GSS-----VPEKQSRCVNI-EWHR----- 133

  Fly   269 VNSVCFLHDKDPNVIIAGCDDGLLKVYDLRTTFRSRDLSKSVASFIGHYDGITYIDSRNDGYHVL 333
                 |...:|..::..|.::|.:|::|:.|       .|.:.:.:.|.:.:..:....||..:|
  Rat   134 -----FRFGQDQLLLATGLNNGRIKIWDVYT-------GKLLLNLVDHIEVVRDLTFAPDGSLLL 186

  Fly   334 -SNSKDQSIKIWDIRQPSNMRNRSRSRQQVDPTTWDYRWNRVPREFYNPHKPLEGDSSIMTYRGH 397
             |.|:|:::::||::...||                                      :...|||
  Rat   187 VSASRDKTLRVWDLKDDGNM--------------------------------------VKVLRGH 213

  Fly   398 RVTKTLLRAKFSPMEQTGQRYIYTG---------CATG---RIIIYDVLTGKIQEAIEGHRTVIR 450
                              |.::|:.         |:.|   .:.::::....:...:|||...:.
  Rat   214 ------------------QNWVYSCAFSPDCSMLCSVGASKAVFLWNMDKYTMIRRLEGHHHDVV 260

  Fly   451 DLDWHPDRSEIVSGSWDTHVHL 472
            ..|:.||.:.:.:.|:||.|::
  Rat   261 ACDFSPDGALLATASYDTRVYV 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9945NP_611494.1 WD40 128..467 CDD:295369 59/340 (17%)
WD40 repeat 131..170 CDD:293791
WD40 <133..478 CDD:225201 62/347 (18%)
WD40 repeat 178..220 CDD:293791 16/77 (21%)
WD40 repeat 225..260 CDD:293791 7/34 (21%)
WD40 repeat 270..314 CDD:293791 8/43 (19%)
WD40 repeat 323..395 CDD:293791 10/72 (14%)
WD40 repeat 403..443 CDD:293791 4/51 (8%)
Wsb1NP_001036026.1 WD40 38..382 CDD:225201 62/347 (18%)
WD40 135..388 CDD:238121 35/211 (17%)
WD40 repeat 174..212 CDD:293791 10/75 (13%)
WD40 repeat 217..253 CDD:293791 3/35 (9%)
WD40 repeat 261..299 CDD:293791 7/22 (32%)
WD40 repeat 314..353 CDD:293791
SOCS_WSB1_SWIP1 382..421 CDD:239715
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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