DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hil and Crip2

DIOPT Version :9

Sequence 1:NP_611493.2 Gene:Hil / 37328 FlyBaseID:FBgn0050147 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_077185.1 Gene:Crip2 / 68337 MGIID:1915587 Length:208 Species:Mus musculus


Alignment Length:142 Identity:37/142 - (26%)
Similarity:54/142 - (38%) Gaps:20/142 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 STCLRCSETVYQVDRVGPL-KDFTFFHSGCFKCVHCGTKLTLKTYFNNQHKQDDKEVYCSSHVP- 71
            |.|.:|.:|||..::|..| ||   :|..|.||..|.     ||.....|.:.|.:.:|  |.| 
Mouse     3 SKCPKCDKTVYFAEKVSSLGKD---WHKFCLKCERCN-----KTLTPGGHAEHDGKPFC--HKPC 57

  Fly    72 ---KSGPGHLDQTSVGI----RQALNAPR-TNKFVNEQIRGTRSEVDGGPLGGSRQSTPNGYGSR 128
               ..||..::....|.    :....||: |.......:|....:..|.|.|.|:.|:...:...
Mouse    58 YATLFGPKGVNIGGAGSYIYEKPQTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGE 122

  Fly   129 EISSPSQNDSDY 140
            ....|..|...|
Mouse   123 PNMCPRCNKRVY 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HilNP_611493.2 LIM_Ltd-1 11..70 CDD:188827 19/59 (32%)
BAR <147..>265 CDD:299863
TGc 418..486 CDD:214673
Crip2NP_077185.1 LIM1_TLP 5..58 CDD:188860 21/62 (34%)
LIM1_TLP 126..179 CDD:188860 3/9 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.