DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hil and lima1a

DIOPT Version :9

Sequence 1:NP_611493.2 Gene:Hil / 37328 FlyBaseID:FBgn0050147 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_571739.1 Gene:lima1a / 64000 ZFINID:ZDB-GENE-001120-1 Length:629 Species:Danio rerio


Alignment Length:461 Identity:92/461 - (19%)
Similarity:155/461 - (33%) Gaps:184/461 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TCLRCSETVYQVDRVGPLKDFTFFHSGCFKCVHCGTKLTLKTY---FNNQHKQDDKEVYCSSHVP 71
            ||:.|.:|||.::::  :.:...:|:.||:|.:|.|||:|..|   .||        |||..|..
Zfish   285 TCVTCLKTVYPLEKL--VANQQIYHNTCFRCAYCNTKLSLVNYASLHNN--------VYCKPHYC 339

  Fly    72 K--SGPGHLDQTSVGIRQALNAPRTNKF------VNEQIRGTRSE----VDGGPL---------- 114
            :  ...|:.|: ..|.|     |....:      |::|::.:..|    |:..||          
Zfish   340 QLFKAKGNYDE-GFGHR-----PHKELWEGRPEGVDDQVKLSPQETSLTVEESPLVKVNVLAATL 398

  Fly   115 ------GGSRQSTPNGYGSREISSPSQNDSDYKYGRFDASALHI---AHALK------------- 157
                  ...|...|...|..:||.|.|::.       |.||.|.   ...:|             
Zfish   399 ETRTQATSERVEKPLETGRLKISWPPQSEG-------DESATHTVTDGSGIKPIRPKWPPEGDTV 456

  Fly   158 ------QTEIQKAYN----KAREKPIDFYLAREEQAHLEMKHRKEEDDLYRKFASKRAEEDRKIQ 212
                  ::::.|...    |.|.||...:    :.|.:....|           .:|:..:.|  
Zfish   457 SSNVDLESDLPKLRRSVSLKERSKPFCIF----DSAPVAQPKR-----------CQRSPSNEK-- 504

  Fly   213 DEFQDEWERELQRLTHKFEKELATSRRSRDEANILTMRHEQQKEDLEKNMTLRRSKKKESITRKM 277
                .:.|.|:..::...:    |:..|.|    :|..::.::||        :.|.||.   :.
Zfish   505 ----PDSEEEMSPVSSTTD----TTISSED----MTEHNQSEEED--------QDKTKED---EQ 546

  Fly   278 LEHERYETAALVDRQSSEMLELISARRSEYMQSESIFLDDEFSEGAVPVEYPLNAPIPAPPAVSK 342
            :|||.     .||.|..|:..|                             ..:.|..:||...:
Zfish   547 MEHEE-----KVDVQEEELSSL-----------------------------KCSTPDNSPPLSPE 577

  Fly   343 FQIYTDPIE---FEDVDRIAISVAQEDQKTFTDLVRQLVGRCTTDIEKARTIFRWITVKNL--NA 402
            .:...||.|   .:||.......|:||               |.|          :||::|  ..
Zfish   578 SESGLDPEENQASQDVGFWDGEEAEED---------------TAD----------VTVEDLIKRN 617

  Fly   403 MHFDDD 408
            .|:||:
Zfish   618 RHYDDE 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HilNP_611493.2 LIM_Ltd-1 11..70 CDD:188827 20/61 (33%)
BAR <147..>265 CDD:299863 21/143 (15%)
TGc 418..486 CDD:214673
lima1aNP_571739.1 LIM_Eplin_alpha_beta 286..338 CDD:188869 20/61 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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