DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hil and csrp3

DIOPT Version :9

Sequence 1:NP_611493.2 Gene:Hil / 37328 FlyBaseID:FBgn0050147 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_001006836.1 Gene:csrp3 / 448578 XenbaseID:XB-GENE-1010170 Length:194 Species:Xenopus tropicalis


Alignment Length:70 Identity:24/70 - (34%)
Similarity:31/70 - (44%) Gaps:16/70 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 CLRCSETVYQVDRV----GPLKDFTFFHSGCFKCVHCGTKLTLKTYFNNQHKQDDKEVYCSSHVP 71
            |.||.::||..:||    .|      :|..||:|..||..|...|.     .:.|.|:||.....
 Frog   120 CPRCQKSVYAAERVMGGGQP------WHKTCFRCAFCGKSLDSTTV-----TEKDGEIYCKVCYA 173

  Fly    72 KS-GP 75
            || ||
 Frog   174 KSFGP 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HilNP_611493.2 LIM_Ltd-1 11..70 CDD:188827 20/62 (32%)
BAR <147..>265 CDD:299863
TGc 418..486 CDD:214673
csrp3NP_001006836.1 LIM1_CRP3 9..62 CDD:188865
LIM2_CRP3 120..173 CDD:188866 20/63 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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