DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hil and Csrp2

DIOPT Version :9

Sequence 1:NP_611493.2 Gene:Hil / 37328 FlyBaseID:FBgn0050147 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_031818.3 Gene:Csrp2 / 13008 MGIID:1202907 Length:193 Species:Mus musculus


Alignment Length:67 Identity:21/67 - (31%)
Similarity:32/67 - (47%) Gaps:10/67 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 CLRCSETVYQVDR-VGPLKDFTFFHSGCFKCVHCGTKLTLKTYFNNQHKQDDKEVYCSSHVPKS- 73
            |.||.::||..:: :|..|.   :|..||:|..||..|...|.     .:.:.|:||.....|: 
Mouse   119 CSRCGDSVYAAEKIIGAGKP---WHKNCFRCAKCGKSLESTTL-----TEKEGEIYCKGCYAKNF 175

  Fly    74 GP 75
            ||
Mouse   176 GP 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HilNP_611493.2 LIM_Ltd-1 11..70 CDD:188827 18/59 (31%)
BAR <147..>265 CDD:299863
TGc 418..486 CDD:214673
Csrp2NP_031818.3 LIM1_CRP2 9..63 CDD:188864
Nuclear localization signal. /evidence=ECO:0000255 64..69
LIM2_CRP2 119..172 CDD:188871 18/60 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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