DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hil and Csrp3

DIOPT Version :9

Sequence 1:NP_611493.2 Gene:Hil / 37328 FlyBaseID:FBgn0050147 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_476485.2 Gene:Csrp3 / 117505 RGDID:71092 Length:194 Species:Rattus norvegicus


Alignment Length:86 Identity:27/86 - (31%)
Similarity:39/86 - (45%) Gaps:16/86 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 YRPNFYES-TCLRCSETVYQVDRV-GPLKDFTFFHSGCFKCVHCGTKLTLKTYFNNQHKQDDKEV 64
            :...|.|| .|.||.::||..::| |..|.   :|..||:|..||     |:..:......|.|:
  Rat   110 FSAKFGESEKCPRCGKSVYAAEKVMGGGKP---WHKTCFRCAICG-----KSLESTNVTDKDGEL 166

  Fly    65 YCSSHVPKS-GPGHLDQTSVG 84
            ||.....|: ||     |.:|
  Rat   167 YCKVCYAKNFGP-----TGIG 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HilNP_611493.2 LIM_Ltd-1 11..70 CDD:188827 19/59 (32%)
BAR <147..>265 CDD:299863
TGc 418..486 CDD:214673
Csrp3NP_476485.2 Interaction with TCAP. /evidence=ECO:0000250|UniProtKB:P50461 1..5
LIM1_CRP3 9..62 CDD:188865
Nuclear localization signal. /evidence=ECO:0000255, ECO:0000305|PubMed:19376126 64..69
Interaction with CLF2. /evidence=ECO:0000250|UniProtKB:P50461 94..105
LIM2_CRP3 120..173 CDD:188866 19/60 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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