DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mgat1 and famp-1

DIOPT Version :10

Sequence 1:NP_525117.2 Gene:Mgat1 / 37323 FlyBaseID:FBgn0034521 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_500183.2 Gene:famp-1 / 177015 WormBaseID:WBGene00019786 Length:822 Species:Caenorhabditis elegans


Alignment Length:307 Identity:57/307 - (18%)
Similarity:119/307 - (38%) Gaps:86/307 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 PIIVSQDCGDEP---TKEAILS---YGKQVTLI----EQPDLSDITVLPKEK----KFKGYYKIA 200
            ||:|:.....:.   |.|::|:   ...|:.|:    |..:.:|:..|...|    :..|.|.  
 Worm   510 PILVASGLAPDSLRITLESLLNQEGLNTQMVLVTYDKEYSENADLVSLFHVKSVAIQSNGSYN-- 572

  Fly   201 RHYGWALNTTFAV--GFEFVIIVEDDLNVAPDFFEYFLGTHKLLKQDPSLWCVSAWNDNGKAAVV 263
            .|...:|:..|::  ....|:::|:|:.::.|:..||...::..|.|.::....|:|.||   .:
 Worm   573 AHLLLSLSNAFSIFPDASSVLVIEEDVTLSTDWLHYFSSIYEPYKADSTVDLALAFNSNG---FI 634

  Fly   264 D-AAQPELLYR-TDFFPGLGWMLTKDLWAELSVK------WPKSFWDDWIRHPAQRKDRVCIRPE 320
            | :...:.:|| .:..|...:::.:||: |..::      ..:..||        .::.:.:.|.
 Worm   635 DTSGDGQTVYRIKNHLPIGSYLMKRDLY-EKHIRLREFCCTERGNWD--------LRESISLVPA 690

  Fly   321 ISRTRTFGKIGVSNGLFFDKYLKHIKLSEDFVQFTKINMSYLLKDNYDNTFLRRVYTYPIVTYDE 385
            :||                     |::..|.::             ..|...||..|       .
 Worm   691 MSR---------------------IEIQVDELE-------------KKNVLFRRNRT-------A 714

  Fly   386 LRRNLIRIEGPVRIQYTTREQYKRTTKMLGLMDDFKSGVPRTAYHGI 432
            .::|.:     :..::.|.|:|  .|.:..|:.:.|..:|.|....|
 Worm   715 TQQNYL-----INTEFETSEEY--LTHLNQLVQNTKKSIPITEIQSI 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mgat1NP_525117.2 GT13_GLCNAC-TI 119..449 CDD:133007 57/307 (19%)
famp-1NP_500183.2 PANDER_like 81..226 CDD:260110
PANDER_like 290..438 CDD:260110
Glyco_tranf_GTA_type 508..>663 CDD:472172 35/158 (22%)
Blue background indicates that the domain is not in the aligned region.

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