DRSC/TRiP Functional Genomics Resources

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Protein Alignment lms and HB5

DIOPT Version :9

Sequence 1:NP_001286635.1 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_201334.1 Gene:HB5 / 836656 AraportID:AT5G65310 Length:312 Species:Arabidopsis thaliana


Alignment Length:117 Identity:39/117 - (33%)
Similarity:54/117 - (46%) Gaps:16/117 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PATSSCLDDNMDDGKSDIDLASDDGN-----GLGD------DRKKRPRTAFSAAQIKALETEFER 107
            |.|:..|.....|.....|...|||:     |:|.      ::|:|    ....|:||||..||.
plant    30 PTTTGFLYSGAGDYSQMFDALEDDGSLEDLGGVGHASSTAAEKKRR----LGVEQVKALEKNFEI 90

  Fly   108 GKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTS-DVETLASHYYA 158
            ...|...::..||::|.|...|:.|||||||.:||.|... |...|.|::.|
plant    91 DNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDA 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmsNP_001286635.1 Cnd2 33..>106 CDD:303063 17/62 (27%)
Homeobox 89..142 CDD:278475 20/52 (38%)
HB5NP_201334.1 Homeobox 79..125 CDD:278475 20/45 (44%)
HALZ 127..168 CDD:280364 5/16 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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