Protein Alignment lms and HB17

DIOPT Version :10

• Sequence 1: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_178252.2
• Gene: HB17 / 814671
• AraportID: AT2G01430
• Length: 275
• Species: Arabidopsis thaliana
• Alignment Length: 241
• Identity: 62/241 - (25%)
• Similarity: 88/241 - (36%)
• Gaps: 63/241 - (26%)

  Fly    11 PHSFSIEQILAKPEMRSS-------TSFEDSVQDESGRGGNCLGASRASSPATSSCLDDN----M 64
            |::..|:.:...||..|:       ..|..|...:.|.||   |..:..       ||.|    .
plant    66 PNNSLIKIMAILPENSSNLDLTISVPGFSSSPLSDEGSGG---GRDQLR-------LDMNRLPSS 120

  Fly    65 DDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQ 129
            :|| .|.:.:.|||:.     ..|.:...:..|.:.||..|.:...|:..::..|||.|.|...|
plant   121 EDG-DDEEFSHDDGSA-----PPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQ 179

  Fly   130 IKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLA-------------RPMVVGDRLWLFSQT 181
            |::||||||.:.|.|.| ::|.    .|.:...|.|.             |.|.|
plant   180 IEVWFQNRRARSKLKQT-EMEC----EYLKRWFGSLTEENHRLHREVEELRAMKV---------- 229

  Fly   182 PTGPTPIQSIMLNGSGSAAPMASATTATGSPMR---PYATSGGMPP 224
              |||.:.|.   .|.:..|.....|...||.|   |.......||
plant   230 --GPTTVNSA---SSLTMCPRCERVTPAASPSRAVVPVPAKKTFPP 270

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	18/76 (24%)
		Homeodomain	87..143	CDD:459649	19/55 (35%)
HB17	NP_178252.2	HOX	136..192	CDD:197696	19/55 (35%)
		HALZ	194..237	CDD:128634	12/59 (20%)