DRSC/TRiP Functional Genomics Resources

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Protein Alignment lms and hoxa13a

DIOPT Version :10

Sequence 1:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001078963.1 Gene:hoxa13a / 570239 ZFINID:ZDB-GENE-990415-5 Length:310 Species:Danio rerio


Alignment Length:107 Identity:33/107 - (30%)
Similarity:53/107 - (49%) Gaps:11/107 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 SGRGGN--CLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKAL 101
            ||..|.  |....:.:.....|.:.:::..|.:       ||:.....|||  |..::..|:|.|
Zfish   204 SGWNGQVYCTKEQQQTGNVWKSSIPESVSHGGA-------DGSSFRRGRKK--RVPYTKVQLKEL 259

  Fly   102 ETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKR 143
            |.|:...|:::..||..::.|..|:|.|:.|||||||.|.|:
Zfish   260 EREYATNKFITKDKRRRISAQTNLSERQVTIWFQNRRVKEKK 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 17/68 (25%)
Homeodomain 87..143 CDD:459649 22/55 (40%)
hoxa13aNP_001078963.1 HoxA13_N 29..148 CDD:463521
Homeodomain 245..301 CDD:459649 24/57 (42%)
Blue background indicates that the domain is not in the aligned region.

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