Protein Alignment lms and Noto

DIOPT Version :10

• Sequence 1: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_001178943.1
• Gene: Noto / 502857
• RGDID: 1562910
• Length: 245
• Species: Rattus norvegicus
• Alignment Length: 187
• Identity: 50/187 - (26%)
• Similarity: 68/187 - (36%)
• Gaps: 64/187 - (34%)

  Fly     9 RYPHSFSIEQILAKPEMR--SSTSFEDSVQDESGRGG---------------------------- 43
            |...|||:|.|||:||.|  |:||...|.......|.
  Rat    39 RLESSFSVEAILARPETREHSATSLPLSTCTSLNFGSVSQYQVLPWVCSTGTWLPTYLSVGIYPM 103

  Fly    44 --------------NCLGASRASSPATSSCLDD-------NMDDGKSDIDLASDDGNGLGDDRKK 87
                          .|....|.:.....|||..       |:.|..:             :..:|
  Rat   104 CSMSCMPGLNVTHLFCQQGLRLTGSELPSCLGPLKRAPTVNLQDHNT-------------ERHQK 155

  Fly    88 RPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRK 144
            |.||.||..|:..||..|.:...|...:|..||.:|.|||.|::|||||||.|::::
  Rat   156 RVRTMFSEQQLGELEKVFAKQHNLVGKERAQLAARLHLTENQVRIWFQNRRVKYQKQ 212

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	18/121 (15%)
		Homeodomain	87..143	CDD:459649	27/55 (49%)
Noto	NP_001178943.1	Homeodomain	155..211	CDD:459649	27/55 (49%)