Protein Alignment lms and bcd

DIOPT Version :10

• Sequence 1: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Alignment Length: 150
• Identity: 44/150 - (29%)
• Similarity: 72/150 - (48%)
• Gaps: 20/150 - (13%)

  Fly    68 KSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKI 132
            |.|:..:.:..:.|...|.:|.||.|:::||..||..|.:|:||:..:...|:.:|.|...|:||
  Fly    79 KPDVFPSEELPDSLVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 143

  Fly   133 WFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSG 197
            ||:|||.:.|         :.|..:......|:  |:..|     ..|:...|..:|::.|  .|
  Fly   144 WFKNRRRRHK---------IQSDQHKDQSYEGM--PLSPG-----MKQSDGDPPSLQTLSL--GG 190

  Fly   198 SAAPMASATTATGSPMRPYA 217
            .|.|  :|.|.:.:|..|.|
  Fly   191 GATP--NALTPSPTPSTPTA 208

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	12/37 (32%)
		Homeodomain	87..143	CDD:459649	23/55 (42%)
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	19/46 (41%)