DRSC/TRiP Functional Genomics Resources

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Protein Alignment lms and HOXD11

DIOPT Version :10

Sequence 1:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_067015.2 Gene:HOXD11 / 3237 HGNCID:5134 Length:338 Species:Homo sapiens


Alignment Length:127 Identity:41/127 - (32%)
Similarity:63/127 - (49%) Gaps:7/127 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 AKPEMRSSTSFEDSVQDESGRGGN-CLGASRASSP---ATSSCLDDNMDDGKSDIDLASDDGNGL 81
            |.|:...:....|......|.||: |..|:..|.|   |..|..|.....|::..:.:|   :.:
Human   200 APPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSS---SAV 261

  Fly    82 GDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKR 143
            ...|.::.|..::..||:.||.||....|::..||..|::.|.||:.|:||||||||.|.|:
Human   262 APQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 20/76 (26%)
Homeodomain 87..143 CDD:459649 24/55 (44%)
HOXD11NP_067015.2 DUF3528 26..185 CDD:432284
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..270 16/72 (22%)
Homeodomain 267..323 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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