Protein Alignment lms and Lim1

DIOPT Version :10

• Sequence 1: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Alignment Length: 270
• Identity: 69/270 - (25%)
• Similarity: 100/270 - (37%)
• Gaps: 76/270 - (28%)

  Fly    23 PEMRSSTSFEDSVQDESG--RGGNCLGASRAS--SPAT-SSCLDDNMDDGKSDID---------- 72
            |.:| :|:....|...:|  ..|..||.|..|  |.:| |....|:.|.|..|.|
  Fly   172 PHLR-ATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAE 235

  Fly    73 -LASDDGNGLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQN 136
             .:.||.||   .:::.|||...|.|::.|:|.|.:....:...|..|||:..|....|::||||
  Fly   236 NKSPDDANG---SKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQN 297

  Fly   137 RRTKWKRKYTSDVETLAS-------------------------------HYYA-----QLGIGGL 165
            :|:|.:|     ::.:.|                               .|:|     :.|.||
  Fly   298 KRSKERR-----MKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKFEFGYGG- 356

  Fly   166 ARPMVVGDRLWLFSQTPTGPTPIQS-----------IMLNGSGSAAPMASATTATGSPMRPYATS 219
              |....|..: |...|.||.|..:           .|:|..|..........|.|.||:..:..
  Fly   357 --PFHPHDGPY-FPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQSAV 418

  Fly   220 GGMPPLPGPS 229
            |..||.|.||
  Fly   419 GPPPPPPPPS 428

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	26/88 (30%)
		Homeodomain	87..143	CDD:459649	20/55 (36%)
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753
		LIM2_Lhx1_Lhx5	86..141	CDD:188761
		COG5576	185..324	CDD:227863	40/146 (27%)
		Homeodomain	248..304	CDD:459649	20/55 (36%)