DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lms and msx1b

DIOPT Version :10

Sequence 1:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_571335.1 Gene:msx1b / 30511 ZFINID:ZDB-GENE-980526-26 Length:257 Species:Danio rerio


Alignment Length:240 Identity:61/240 - (25%)
Similarity:95/240 - (39%) Gaps:66/240 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 FSIEQILAKPEMRSSTSFEDSVQDESGRGGNCLGA-----SRASSPATSSCLDDNMDDGK--SDI 71
            ||:|.::||...:.............|.|.:.:..     ::.|....||..|...||.:  ||.
Zfish    44 FSVESLMAKSSCQQVACSPALQHQRMGHGQDLVRTYFVEKAKVSVDTLSSVSDSLNDDSEELSDK 108

  Fly    72 DLA--SDDGNGLGDDR--------------KKRPRTAFSAAQIKALETEFERGKYLSVAKRTALA 120
            :.:  |:..:.....|              .::|||.||.:|:.:||.:|.:.:|||:|:|...:
Zfish   109 EQSTWSNSSSFTSPPRHPSPTPCTLRKHKTNRKPRTPFSTSQLLSLERKFRQKQYLSIAERAEFS 173

  Fly   121 KQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGP 185
            ..|.|||||:||||||||.|.||...:::|....          .::|::....|         |
Zfish   174 NSLNLTETQVKIWFQNRRAKAKRLQEAELEKFKC----------ASKPLLAPFAL---------P 219

  Fly   186 TPIQSIMLNGSGSAAPMASATTATGSPMRPYATSGGMP---PLPG 227
            .|:                     |||...|......|   |:||
Zfish   220 FPL---------------------GSPSSLYGPPASFPRPVPMPG 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 20/95 (21%)
Homeodomain 87..143 CDD:459649 29/55 (53%)
msx1bNP_571335.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..146 12/54 (22%)
Homeodomain 140..196 CDD:459649 29/55 (53%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.