DRSC/TRiP Functional Genomics Resources

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Protein Alignment lms and Dlx5

DIOPT Version :10

Sequence 1:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_037075.1 Gene:Dlx5 / 25431 RGDID:2506 Length:289 Species:Rattus norvegicus


Alignment Length:229 Identity:56/229 - (24%)
Similarity:86/229 - (37%) Gaps:97/229 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 GDDRK-KRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKY 145
            |..:| ::|||.:|:.|:.||:..|::.:||::.:|..||..|.||:||:||||||:|:|     
  Rat   132 GKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK----- 191

  Fly   146 TSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGS--GSAAPMASATTA 208
                                                      |:.||.||.  ...:|.:|...|
  Rat   192 ------------------------------------------IKKIMKNGEMPPEHSPSSSDPMA 214

  Fly   209 TGSPMRPYATSGGMPPLPGPSVMESARNAILARGQPLNFALPFGVAKPPAGGVPAASYIPRCKPY 273
            ..||.             .|:|.|                        |.|...:.|:.|...|.
  Rat   215 CNSPQ-------------SPAVWE------------------------PQGSSRSLSHHPHAHPT 242

  Fly   274 ------ATSYVDYAAS-LPTNESYLQMKYATLPP 300
                  |:||::.:|| .|:..|.:.   :.|||
  Rat   243 TSNQSPASSYLENSASWYPSAASSIN---SHLPP 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 9/24 (38%)
Homeodomain 87..143 CDD:459649 26/55 (47%)
Dlx5NP_037075.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
DLL_N 32..118 CDD:463567
Homeodomain 138..194 CDD:459649 27/102 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..253 17/91 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 270..289 3/4 (75%)
Blue background indicates that the domain is not in the aligned region.

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