Protein Alignment lms and lin-39

DIOPT Version :10

• Sequence 1: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_001021164.1
• Gene: lin-39 / 176068
• WormBaseID: WBGene00003024
• Length: 253
• Species: Caenorhabditis elegans
• Alignment Length: 149
• Identity: 49/149 - (32%)
• Similarity: 67/149 - (44%)
• Gaps: 31/149 - (20%)

  Fly    27 SSTSFEDSVQDESGRGG---NCLG-ASRASSPATSSCL----------DDNMDDGK-----SDID 72
            ||:..........|.||   ..|| .|...:|:.:|..          ||:.||.|     .|.|
 Worm    75 SSSQIASYFASSQGLGGPQYPILGDQSLCYNPSVTSTHHDWKHLEGDDDDDKDDDKKGISGDDDD 139

  Fly    73 LASDDGNGL------------GDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQL 125
            :..:.|..:            |...:||.|||::..|:..||.||...|||:..:|..:|..|.|
 Worm   140 MDKNSGGAVYPWMTRVHSTTGGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLML 204

  Fly   126 TETQIKIWFQNRRTKWKRK 144
            ||.|:||||||||.|.|::
 Worm   205 TERQVKIWFQNRRMKHKKE 223

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	26/103 (25%)
		Homeodomain	87..143	CDD:459649	29/55 (53%)
lin-39	NP_001021164.1	Homeodomain	166..222	CDD:459649	29/55 (53%)