DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lms and barhl2

DIOPT Version :10

Sequence 1:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster
Sequence 2:XP_012817899.1 Gene:barhl2 / 100493839 XenbaseID:XB-GENE-482777 Length:359 Species:Xenopus tropicalis


Alignment Length:734 Identity:149/734 - (20%)
Similarity:232/734 - (31%) Gaps:247/734 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1170 HGPHSRRMTVDNK--YGF--SSSKNGI------GGGPSMNPEDAIYGSSTSRPAPPLQGTANGPH 1224
            |...|:.:.|..:  .||  :|..|.|      .||..::..:.:..||   ||..|.......:
 Frog    54 HHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSS---PADKLDSRFRKGN 115

  Fly  1225 FGT---VPDLPPRIDRASKPA--------------------NAPGAPSTSGSSLPSRNSSSGGTL 1266
            |||   ..|.|.:.|:..|.:                    |..|.|:...:.....|.:.|   
 Frog   116 FGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPG--- 177

  Fly  1267 GRSAQERLFGNGKQSSTDALHDPTSSAQDEYSSRNQLLGLGAGDKRPTLPPMVNGGTTAPGAASS 1331
                       .:|:|      ||...:....:.|...|||         |:.|.....|    .
 Frog   178 -----------SRQAS------PTEVVERLGPNTNPSEGLG---------PLPNPTANKP----L 212

  Fly  1332 LERNPNANT-SLDRSGGGGGGGRSAGHHHPGNN-PQNTSGKANGSYDSVSSYDSYNTSSQLTAQN 1394
            :|...|..| :||..  ...|..|....:|||. |.::||...|.:|..|....:..::.||.|.
 Frog   213 VEEFSNPETQNLDAM--EQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQ 275

  Fly  1395 MRLGPNAPDDLKSVPNRNGAHAMGANVSGLSDYGRNPALNNAPSDMLLTTARSNYNVHETLTQRN 1459
            :.........|        |.|...:::|:...|..||. ..|:..:::.|....:.:       
 Frog   276 LTAAQQQQYAL--------AAAQQPHIAGVFSAGLAPAA-FVPNPYIISAAPPGTDPY------- 324

  Fly  1460 SGDRTAGGMNMPQRPTNLVLDSPRKHIIETKTDYGKY-----------SRNNSASQADYSK---- 1509
                ||.|:..........:..|:.:.:    .:|.|           :.||:|||...|:    
 Frog   325 ----TAAGLAAAATLAGPAVVPPQYYGV----PWGVYPANLFQQQAAAAANNTASQQAASQAQPG 381

  Fly  1510 ---------------PNKG----------------PSM-------IGSPG----------PPPGA 1526
                           ||:|                |::       .|.||          ...||
 Frog   382 QQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA 446

  Fly  1527 M----GANMGNGAPFKPVPPPKPKNYRPPV---------------GGSGSNGTGMHHSGQWDNG- 1571
            :    ||..|.|||.:.:.|       .||               ||:.|:.||.      .|| 
 Frog   447 LVVGPGARTGLGAPVRLMAP-------TPVLISSAAAQAAAAAAAGGTASSLTGS------TNGL 498

  Fly  1572 -EPISPRSPDGFYYPP---MASSHYHQGMAHNVPSSPNNGGSHAPGMHPYNPYTVGNGANGGN-- 1630
             .||..:.|......|   :.|:.::...:....|..::..||.||    .|.:...|...||  
 Frog   499 FRPIGTQPPQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPG----QPGSTSLGFGSGNSL 559

  Fly  1631 ---------GGPMYNGNANGSHSYMSNG----VRDMGAMGASNGYNNGNAQYPYGNTYMHRGNGA 1682
                     |.....|..|||..|:|..    .:...|...|:.:::.:..:|......:|.:  
 Frog   560 GAAIGSALSGFGSSGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRLRYNRSD-- 622

  Fly  1683 GTHGIALHPSDRHALDLAGSREQRGSAFELYRKPQLGTMVGHHHNIRDMEPMMSIHEFNQHQQHL 1747
                  :.||.|..| |...|..|      :...||..::||            |.||:|.|   
 Frog   623 ------IMPSGRSRL-LEDFRNNR------FPNLQLRDLIGH------------IVEFSQDQ--- 659

  Fly  1748 MHQERMRQLQQQPLPPIPR 1766
             |..|..|.:.:...|..|
 Frog   660 -HGSRFIQQKLERATPAER 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmsNP_611491.2 Cnd2 33..>106 CDD:450400
Homeodomain 87..143 CDD:459649
barhl2XP_012817899.1 Homeodomain 205..261 CDD:459649 17/61 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.