Protein Alignment lms and nkx1-2

DIOPT Version :9

• Sequence 1: NP_001286635.1
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: XP_002937845.1
• Gene: nkx1-2 / 100486193
• XenbaseID: XB-GENE-854960
• Length: 246
• Species: Xenopus tropicalis
• Alignment Length: 294
• Identity: 66/294 - (22%)
• Similarity: 97/294 - (32%)
• Gaps: 140/294 - (47%)

  Fly    17 EQILAKPEMRSSTS---FEDSVQDESGRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDG 78
            :.:::.||:::.||   .|:..:.|..:       ...:.|:.::|
 Frog    60 DSMVSGPEIKAETSPGEPEELPEKEENQ-------ETQNVPSVTNC------------------- 98

  Fly    79 NGLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKR 143
                  :.:|.||||:..|:.|||:.|...:||||.:|.:||..|.|||||:||||||||||||:
 Frog    99 ------KPRRARTAFTYEQLVALESRFRSSRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKK 157

  Fly   144 KYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSGSAAPMASATTA 208
                                                |.|.|       .|.|.|.:..
 Frog   158 ------------------------------------QQPIG-------SLEGRGCSIQ------- 172

  Fly   209 TGSPMRPYATSGGMPPLPGPSVMESARNAILARGQPLNFALPFGVAKPPAGGVPAASYIPRC--- 270
                        ..|.:|||..                        .||....|.|::||..
 Frog   173 ------------NCPTIPGPRF------------------------TPPLPNYPCATHIPHIGAG 201

  Fly   271 ------------KPYATSYVDYAASLPTNESYLQ 292
                        .|.:||:    ...||..:|.|
 Frog   202 ANHLSPFPGIFFSPPSTSF----GLSPTGATYPQ 231

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lms	NP_001286635.1	Cnd2	33..>106	CDD:303063	12/72 (17%)
		Homeobox	89..142	CDD:278475	32/52 (62%)
nkx1-2	XP_002937845.1	Homeobox	104..157	CDD:365835	33/52 (63%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	2.000