Protein Alignment lms and hoxd3

DIOPT Version :10

• Sequence 1: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: XP_002935734.1
• Gene: hoxd3 / 100038058
• XenbaseID: XB-GENE-478462
• Length: 415
• Species: Xenopus tropicalis
• Alignment Length: 326
• Identity: 81/326 - (24%)
• Similarity: 121/326 - (37%)
• Gaps: 87/326 - (26%)

  Fly    13 SFSIEQILAKPEMRSSTSFEDSVQDESGRGGNCLGASRAS-SPATSSCLDDNMDDGKSDIDLASD 76
            |.|.:|..|.....||.|..:|...:..:..|..|:|:|: |......:.::..:.|.. :.:|.
 Frog    98 SISNQQHQAPSLPPSSPSHGNSSAQKKSKSSNSSGSSQATLSKQIFPWMKESRQNAKQK-NTSSS 161

  Fly    77 DGNGLGDD---------RKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKI 132
            .....|::         ..||.|||:::||:..||.||...:||...:|..:|..|.|||.||||
 Frog   162 SSTPPGENCEEKSPTGPSSKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 226

  Fly   133 WFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSG 197
            ||||||.|:|:...:.            ||                ..:|.|.:|.:|..|:||.
 Frog   227 WFQNRRMKYKKDQKAK------------GI----------------MHSPAGQSPDRSPTLSGSN 263

  Fly   198 SAAPMASATTATGSPMRPYATSGGMPPLPGP-SVMESARN--AILARGQPLNFALP--------- 250
            .....:...|......          ..|.| |..:|.:|  .:.|...||:..||
 Frog   264 HVGYSSQLPTVNSLSY----------DAPSPTSFAKSQQNMYGLAAYTAPLSSCLPQQKRYPGAE 318

  Fly   251 ---------FGVAKPPAGGVPA------ASYIPRCKPY---------ATSYVDY--AASLPTNES 289
                     .|.|.|...|.|.      ...:|...|.         :::.|||  ||.:|.|..
 Frog   319 YEHHTMQGNSGFANPNLQGSPVYVGGNFVDSMPASGPMFNVGHLSHPSSASVDYSCAAQIPGNHH 383

  Fly   290 Y 290
            :
 Frog   384 H 384

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	19/82 (23%)
		Homeodomain	87..143	CDD:459649	30/55 (55%)
hoxd3	XP_002935734.1	Homeodomain	181..237	CDD:459649	30/55 (55%)
		DUF4074	352..413	CDD:463833	8/33 (24%)