DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP-like3 and XTH13

DIOPT Version :9

Sequence 1:NP_611483.1 Gene:GNBP-like3 / 37313 FlyBaseID:FBgn0034511 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_200562.1 Gene:XTH13 / 835858 AraportID:AT5G57540 Length:284 Species:Arabidopsis thaliana


Alignment Length:179 Identity:38/179 - (21%)
Similarity:62/179 - (34%) Gaps:52/179 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QNSKLTIYLFLVAISVGSSL-SYDVPKATVKVNSPKGFEVSIPDEPGISLFAFH-------GKVN 59
            |:..|...|.|:::|.||.. ::|:.....:.|..:..::.......||...|.       ||::
plant     8 QSLLLLSLLLLISLSAGSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKID 72

  Fly    60 EEMDDL---SDQTWAADVVSSRNGRW-----------------------TYRNRNHQLRPGDVLY 98
            .:|..:   |..|..|..:||:...|                       |....|.:::    .|
plant    73 MKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQ----FY 133

  Fly    99 YW--TTARYHGVDYHNY----NQRYVVGQGDSQRIDV---NGSNGGRQP 138
            .|  .||     |:|.|    |...::...|...|.|   |.:||...|
plant   134 LWFDPTA-----DFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYP 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP-like3NP_611483.1 CBM39 26..121 CDD:292510 23/133 (17%)
XTH13NP_200562.1 GH16_XET 23..281 CDD:185685 33/164 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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