DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP-like3 and XTH19

DIOPT Version :9

Sequence 1:NP_611483.1 Gene:GNBP-like3 / 37313 FlyBaseID:FBgn0034511 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_194758.1 Gene:XTH19 / 829152 AraportID:AT4G30290 Length:277 Species:Arabidopsis thaliana


Alignment Length:119 Identity:25/119 - (21%)
Similarity:39/119 - (32%) Gaps:42/119 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 VSIPDEPGISLFAFHGKVNEEMDDLSDQTWAADVVSSRNGRWTYRNRNHQLRPGDVLYYWTTARY 105
            |..|.:..:.|:|              ..|.|:..::|.|          |...|    |:.|.:
plant   173 VPFPTKQPMRLYA--------------SLWEAEHWATRGG----------LEKTD----WSKAPF 209

  Fly   106 HGVDYHNYNQRYVV-----------GQGDSQRIDVNGSNGGRQPIVANGHNTFN 148
            ... |.|||....|           .|..:|::|.||..  |...|.:.:..:|
plant   210 TAY-YRNYNVEGCVWVNGKSVCPANSQWFTQKLDSNGQT--RMKGVQSKYMVYN 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP-like3NP_611483.1 CBM39 26..121 CDD:292510 17/90 (19%)
XTH19NP_194758.1 GH16_XET 20..276 CDD:185685 25/119 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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