DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP-like3 and XTH29

DIOPT Version :9

Sequence 1:NP_611483.1 Gene:GNBP-like3 / 37313 FlyBaseID:FBgn0034511 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_193634.1 Gene:XTH29 / 827635 AraportID:AT4G18990 Length:357 Species:Arabidopsis thaliana


Alignment Length:85 Identity:19/85 - (22%)
Similarity:34/85 - (40%) Gaps:21/85 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 GFEVSIPDEPG-------ISLFAFHGKV----NEEMD-----DLSDQTWAADVVSSRNGRWTYRN 86
            ||..|:...||       ::.:..:|.|    ::|:|     :|..:.|........||. |.|.
plant    83 GFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGS-TNRG 146

  Fly    87 RNHQLRPGDVLYYWTTARYH 106
            |..:.|    |::..:..:|
plant   147 REERYR----LWFDPSKEFH 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP-like3NP_611483.1 CBM39 26..121 CDD:292510 19/85 (22%)
XTH29NP_193634.1 LamG 40..312 CDD:304605 19/85 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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