DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VIII and sns

DIOPT Version :9

Sequence 1:NP_001097382.2 Gene:side-VIII / 37310 FlyBaseID:FBgn0086604 Length:1201 Species:Drosophila melanogaster
Sequence 2:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster


Alignment Length:1294 Identity:268/1294 - (20%)
Similarity:414/1294 - (31%) Gaps:419/1294 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 MTRNIEEENALLLLLAGPPVLSESIM-------GTVGRLPC---NVTPPIYEDRVALVIWYKVGL 93
            :|.|:...:.:.:|....|.|....|       |:|.:|.|   ...|      :|.:.|||   
  Fly   464 LTENVVSTHTINVLYPPAPPLISGYMEGQIIPAGSVQKLLCVSSGGNP------LATLTWYK--- 519

  Fly    94 KTPIYSVDTRDSNFAQGTHWSDETYRERLSFHVEGRAGTLTIKSTTEDDTGEYRCRVD------- 151
                     .|.........:|::.           :..:||.:...|:..:|||...       
  Fly   520 ---------NDKRINSVIRAADKSV-----------SAEITILANVSDNQAQYRCEASNSATEIP 564

  Fly   152 -FQKSPTRNSKVNLTVIIPPESVIILDSKGVTIEDHTLGPYNEGSGINITCVAIGGRPQPRVTWL 215
             ||.:       .|:|...||:|      .:.||...|.|   |....|.|.:....|..:::| 
  Fly   565 LFQST-------TLSVHFAPETV------KIRIEPEELRP---GMEATIICDSSSSNPPAKLSW- 612

  Fly   216 HGNTVYKNASVGQPLSERRVGNTL-------SLARLE-RRNLHMQL-----TCRAENNNLTTPII 267
                 :|:   |.|:  ..:.||.       :::.|| |.|:..::     ||::.|..|.....
  Fly   613 -----WKD---GIPI--EGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQRSAH 667

  Fly   268 SSVVLDMNLRPLIVKLQGENRALSAGNSYQLSCVVIGARPAP-TITWWKGST--PMKNTHEIATP 329
            .:|.||:..||..|...........|.|.|:| :...|.|.| |..|.|..|  |....|.|...
  Fly   668 EAVSLDVLYRPKFVPPPSSTAVGVEGESLQVS-LQTRANPTPVTYKWTKDGTTIPQDGDHRIFAD 731

  Fly   330 DGNLTTSVLTFTPTIDDRGKFLSCRAEQSMIPESGMEDGWKLDIYHIPVVSLELGTN----SLNS 390
            .|:     |.||....|.....||.|..|       :.|..|:|    .|.:|.||.    |.|.
  Fly   732 GGS-----LNFTRLHRDDAGIYSCSASNS-------QGGATLNI----TVVVEYGTTIKSVSENI 780

  Fly   391 TLREGIDVFFECNIKSNPWIYE-VSWRHNGKILTNNPAEGIAVSNQSLVLQNASRARSGIYTCVG 454
            .:..|.|....|.::..|...| |.|...|..:|...:...|.....|.:::|.|...|.:.||.
  Fly   781 VVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVA 845

  Fly   455 SNREGDGESNPVQLDIRFAP-VCRPRQRLSYSSGRHETVKVACEIDANPAEATYVWKFNATQGET 518
            .||..:..:..:.|.::||| :.:....|..:||..|..::.|....:| :..::|:     .:.
  Fly   846 DNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSP-KPQFIWR-----QDK 904

  Fly   519 VDIP-------------------ASQVAVDRGRSIAHYTPMTENDYGTLLCWATNEIGDQSEPCV 564
            .|:|                   .|.:.||:         :...|||...|.|.||:|:..|...
  Fly   905 KDLPINRTYKYEVEERKIDSLTYESTLIVDK---------VAPADYGAYECVARNELGEAVETVR 960

  Fly   565 YTIFPAGEPDPLLNCTVLNQTSTGFQIECIEGFNGGLQQDFIMEV---------YMNGTTRHPKI 620
            ..|  ..:|||.|:..:||.|.....:....||:|||:..:.:..         |::|.....|:
  Fly   961 LEI--TSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYIDGLPNSHKL 1023

  Fly   621 SKSKRPYFEVSGLVPGMGYNVFLIANNSKGRSNATILQVYTLKDPEKQTVKITFTKSFQGLRPAY 685
            :        :.||.....|...:::.|..|:|                               :|
  Fly  1024 T--------IGGLRMNTLYLFSVMSWNELGQS-------------------------------SY 1049

  Fly   686 TKTKATATTTSDCVCDEDEFLNLGKGISHDEGTDADQQEDLSLAYAPVIEDIRPFLGILAGIVGS 750
            ....|.|.|..                                |..|                  
  Fly  1050 LPDLARAETKE--------------------------------APPP------------------ 1064

  Fly   751 IFLVALIIVIVVRVRGSSGRDRNNYSHPGSGVGGVGGVGGTTGNGSGMGGGGG----GVGGTTAN 811
                                     |||.|.:||    |..|.:.:.:||..|    |||.    
  Fly  1065 -------------------------SHPASSLGG----GPPTTSQTPLGGTSGMLLVGVGA---- 1096

  Fly   812 GNGSLGLLASNNNGSLVIGTLGHNGGQSVQDMHRIGRETCHVTSSLDSIDKN-PDIIPQDGHDLD 875
                 |::....| ..|||...|...:.     |:.|....:.:.|.....| |:::.       
  Fly  1097 -----GIVVVLLN-VFVIGCCLHKRNEK-----RLKRGLELMPAELTEDSSNTPNLVI------- 1143

  Fly   876 DEWTTKGHGRTYATAAMAEQNAVITSGTYDHLMPTYAVVDKKTAP----------PPGHGQYIQY 930
                   .|.:.|.......||.:.:..:.| .....|.:....|          |..:...:..
  Fly  1144 -------IGISLAAFGFLLVNASLVAWFFVH-QRRKKVAETTNQPAKTATIEMYAPSSYNDTVTG 1200

  Fly   931 NTLIPVS-KMGAYANQQQQLQQQPQQKTELSYSELSAPLVSG----PVGVQR--MAPYC------ 982
            .||..|| |..:|:|:.   ..||:...|:.....|..||.|    |...|:  ..|..      
  Fly  1201 ETLSSVSEKSESYSNEG---SSQPEYIDEVRKKAASTYLVEGSDMPPPRYQKDGTLPVIYPNNVV 1262

  Fly   983 -SATLGRPGRQAELKRAEPNIYSQVNVMMDDEILADLQAATASGRSYVAGAVVDNVGGAP----- 1041
             :.||..|...        |..:.:::..||::|..            .|..:.:...||     
  Fly  1263 NACTLPHPRHN--------NGSAAIHMTRDDQMLIS------------KGVYIPSPSPAPPPDGS 1307

  Fly  1042 ------NLYV----QGYATRIDLAHHPMPMYSTSPM----FGTNSTITGVTMSHPSQLATFSPT- 1091
                  :.|:    ..|...:|....||||....||    ..||...|.:.....:.:|..|.| 
  Fly  1308 YYNMNSDRYLSYPPMEYPAALDFTAQPMPMAHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTL 1372

  Fly  1092 ----------PPPPIFTHSMVTTGDGLLQ------PVTCMGLVATSSA--GASVP---GPVPLAP 1135
                      .|.|..||...|.|...:|      ||.......|:|.  ..|:|   ..:|..|
  Fly  1373 RRGILRGVVGVPQPDVTHHTSTVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLPTATATLPRQP 1437

  Fly  1136 ------------------QQQQQQQLTAANG-GNGSIVGMGMSLYGSDVGKPQLLKTVP 1175
                              ||||||||..... .|.|:||:|:.: .:.:|..|:|...|
  Fly  1438 HGILKDPNRNKQQQQQQQQQQQQQQLQHQQQLLNASLVGVGVPV-SAPLGSLQILNLPP 1495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VIIINP_001097382.2 Ig 55..166 CDD:299845 23/128 (18%)
IG_like 60..166 CDD:214653 21/123 (17%)
Ig 182..266 CDD:299845 22/96 (23%)
Ig 296..373 CDD:299845 23/79 (29%)
IG_like 389..464 CDD:214653 19/75 (25%)
IGc2 394..459 CDD:197706 18/65 (28%)
Ig_3 490..554 CDD:290638 14/82 (17%)
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653 20/118 (17%)
Ig 501..560 CDD:299845 15/87 (17%)
Ig 584..666 CDD:299845 22/95 (23%)
IG_like 585..666 CDD:214653 21/94 (22%)
I-set 678..767 CDD:254352 29/105 (28%)
IGc2 692..757 CDD:197706 23/77 (30%)
Ig 788..849 CDD:143165 15/60 (25%)
Ig 885..960 CDD:143165 17/89 (19%)
FN3 967..1051 CDD:238020 22/122 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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