DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-VIII and ed

DIOPT Version :9

Sequence 1:NP_001097382.2 Gene:side-VIII / 37310 FlyBaseID:FBgn0086604 Length:1201 Species:Drosophila melanogaster
Sequence 2:NP_001260013.1 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster


Alignment Length:1405 Identity:281/1405 - (20%)
Similarity:431/1405 - (30%) Gaps:558/1405 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SSRSLFLPLCLLVLSALNGPAAAASRVRVSSSTTMTRNIE-EENALLLLLAGPPVLSESIMGTVG 68
            |:|.....:|...|.||         |.:||:|....:|: .|||.|                  
  Fly    17 SARRAATTICNFFLIAL---------VALSSTTLADESIDTRENADL------------------ 54

  Fly    69 RLPCNVTPPIYEDRVALVIWYKVGLKTPIYSVDTRDSNFAQGTHWSDETYRERLSFHVEGRAGTL 133
            .|.|..... ||.......|      |...:...:..|.|.|.......|  ||.|..|.....|
  Fly    55 TLKCRFNDK-YEANDFSFFW------TRWTANPAQFDNVAIGEVQLSSGY--RLDFQPERGIYDL 110

  Fly   134 TIKSTTED-DTGEYRCRVDFQKSPTRNSKV-----NLTVIIPPESVIILDSKG---VTIEDHTLG 189
            .||:.:.: |.|.:.||:   |:....:.|     ||||:.||...:|  |.|   |..||..: 
  Fly   111 QIKNVSYNRDNGRFECRI---KAKGTGADVHQEFHNLTVLTPPHPPVI--SPGNIAVATEDKPM- 169

  Fly   190 PYNEGSGINITCVAIGGRPQPRVTWLHGN-------TVYKNASVGQPLSE--------------- 232
                    .:||.:|||.|.|.:||....       ||.|..:..||.:.               
  Fly   170 --------ELTCSSIGGSPDPTITWYREGSNTPLPATVLKGGTKDQPTNATLSIIPRREDDGAKY 226

  Fly   233 ------------RRVGNTLSL-----------------------ARLE--------------RRN 248
                        :|:..|.:|                       |:||              .||
  Fly   227 KCVVRNRAMNEGKRLEATATLNVNYYPRVEVGPENPLRVERDRTAKLECNVDAKPKVPNVRWNRN 291

  Fly   249 -----------LHM-------QLTCRAENNNLTTPIISSVVLDMNLRPLIVKLQGENRALSAGNS 295
                       :|.       :.||.|: |.|.......::||:...|::| ::.:.|....|::
  Fly   292 GRFISSSLVHTIHRVSVQDAGKYTCIAD-NGLGKTGEQELILDILYPPMVV-IESKTREAEEGDT 354

  Fly   296 YQLSCVVIGARPAP-TITWWKGSTPMKNTHEIATPDGNLTTSVLTFTPT-IDDRGKFLSCRAEQS 358
            ..:.|.|. |.||| ||.|.|.:          :||......|||.|.. .|..|.:: ||| .:
  Fly   355 VTIRCNVT-ANPAPVTIEWLKEN----------SPDFRYNGDVLTLTSVRADHAGNYI-CRA-VN 406

  Fly   359 MIPESGME--------------------------------------------DGWKL-------D 372
            ::...|||                                            .||.:       |
  Fly   407 IMQSQGMERSERVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRD 471

  Fly   373 I----------------YHIPVVSL------------ELGTNSLNSTLRE--------------- 394
            :                |.||...|            |||...:.:.:.|               
  Fly   472 MDGEFSSTQKILAQGPQYSIPKAHLGNEGKYHCHAVNELGIGMMATIVLEIHQPPQFLAKLQQHM 536

  Fly   395 -----GIDVFFECNIKSNP-----WI---YEVSWRHNGKILTNNPAEGIAVSNQSLVLQNASRAR 446
                 ..|....|:.|..|     |:   .|:....|...:..||.:|:   |..:.:|:..:.|
  Fly   537 TRRVADTDYTVTCSAKGKPAPSVKWLKDAVEILPEENLYEVQTNPDQGL---NGMVTVQSQLKFR 598

  Fly   447 S--------------GIYTCVGSNREGDGESNPVQLDIRFAP-VCRPRQRLSYSSGRHETVKVAC 496
            .              |:|||:..| |.:..::.:||.|...| |.....::::..  .||.:|.|
  Fly   599 GKARPNGNALVPGDRGLYTCLYQN-EVNSANSSMQLRIEHEPIVLHQYNKVAFDI--RETAEVVC 660

  Fly   497 EIDANPAEATYVWKFN--------ATQGETVDIPASQVAVDRGRSIAHYTPMTENDYGTLLCWAT 553
            ::.|.| :..:.|:|.        ::.|. .:|..:....|...|:.....:|.:|||...|...
  Fly   661 KVQAYP-KPEFQWQFGNNPSPLTMSSDGH-YEISTTTDNNDIYTSVLKINSLTHSDYGEYTCRVA 723

  Fly   554 NEIGDQSEPCVYTIFPAGEPDPLLNCTVLNQTSTGFQIECIE---GFNGGLQQDFIMEVY----- 610
            |.:.....|  ..:...|.|:...|   |..|..|.....:.   ||:|||.:......|     
  Fly   724 NTLDTIRAP--IRLQQKGPPEKPTN---LRATEVGHNYVSLSWDPGFDGGLSKTKFFVSYRRVAM 783

  Fly   611 -------------MNGTTRHPKISKSKRPYFEVSGLVPGMGYNVFLIANNSKGRSNATILQVYTL 662
                         .|..:...::...:....:|:.|.....|...:.|.|.|..|..:...:.|.
  Fly   784 PREEQLIPDCATLANSNSAWVEVDCQRDIPCKVTALEQHQSYAFKVKALNPKSDSPYSSEIMVTT 848

  Fly   663 K------------DPEKQTVKITFTKSFQGLRPAYTKTKATATTTS---DCVCDEDEFLNLGKGI 712
            |            :|..:|:.|....:...| .|..::...|.:..   :.|...|.....|.|.
  Fly   849 KVSRIPPPLQVTYEPNTRTLGIDVGATCLNL-VAVVESMVNADSPMAAWEVVTTMDNLQLSGNGP 912

  Fly   713 SHDE------------------GTDADQQED----LSLAY----APVI----------------- 734
            :|.|                  |....:.||    .|||.    :|.:                 
  Fly   913 THKEKIIDRIIGARRVGGGRALGHTISEDEDDNGLNSLALEDENSPTVRVKLCLRTNPEHCGDYT 977

  Fly   735 --EDIRPFLGILAGIVGSIFLVALIIVIVV-------------------------------RVRG 766
              |..||::. .|..:.:..|:|:|:..||                               .||.
  Fly   978 DAEIGRPYIA-EANALATPTLIAIIVSCVVFALFAGLILMFCRCKRNQSKKSAAAKDYEMDSVRP 1041

  Fly   767 S----------------SGRD------------------------RNNYS-HPGSGVGGVGGVGG 790
            |                ||.|                        :|.|| ||||||.|||..||
  Fly  1042 SIVAAQQNQAPPPYYPASGLDNKALEHSMDLALSMEDQKTALYATQNGYSYHPGSGVVGVGMGGG 1106

  Fly   791 TTGNG------SGMGGGGGGVGGTTANGNGSLGLLA--------------------SNNNGSLVI 829
            ..|.|      ||||||.||:||:....||..||.|                    |||.||:  
  Fly  1107 VVGVGVGGSVVSGMGGGVGGIGGSGVGVNGIPGLSAHTMPGNEWVNMGYMENNYSNSNNGGSV-- 1169

  Fly   830 GTLGHNGGQSVQDMH----RIGRETCHVTSSLDS-IDKNP----DIIPQDGHDLDDEWTTKGHGR 885
                 |...|:..:.    .:|.:...|.:.::. :::.|    |.:...|:...|::....|  
  Fly  1170 -----NSQDSLWQVKMSAAAVGNQQGMVQAPMNQYVEQQPAYGYDPLTHGGYGAVDDYAPYPH-- 1227

  Fly   886 TYATAAMAE-----------QNAVITSGTYDHLMPTYAVVDK----------------KTAPPPG 923
              .||..::           ||    ....|:....||.|.|                ...|.|.
  Fly  1228 --LTATPSQVGDEYHNLRNSQN----PSRQDYCSDPYASVQKPKKRVDQHLDSPYHDVSGLPNPY 1286

  Fly   924 HGQYIQYNTLIPVSKMGAYANQQQQLQQQPQQKTELSYSE 963
            :.::::.:.::|                 |||...|||.:
  Fly  1287 NMEHLEQDEVLP-----------------PQQHMSLSYDD 1309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VIIINP_001097382.2 Ig 55..166 CDD:299845 25/116 (22%)
IG_like 60..166 CDD:214653 25/111 (23%)
Ig 182..266 CDD:299845 30/172 (17%)
Ig 296..373 CDD:299845 26/129 (20%)
IG_like 389..464 CDD:214653 20/116 (17%)
IGc2 394..459 CDD:197706 19/106 (18%)
Ig_3 490..554 CDD:290638 17/71 (24%)
edNP_001260013.1 Ig 50..147 CDD:299845 30/126 (24%)
I-set 146..249 CDD:254352 26/113 (23%)
Ig 168..249 CDD:299845 17/89 (19%)
IGc2 268..323 CDD:197706 10/55 (18%)
Ig_3 341..406 CDD:290638 24/78 (31%)
Ig_2 437..514 CDD:290606 10/76 (13%)
I-set 526..633 CDD:254352 19/110 (17%)
Ig 546..632 CDD:143165 18/89 (20%)
IG_like 654..736 CDD:214653 19/85 (22%)
Ig 656..734 CDD:143165 17/81 (21%)
FN3 741..848 CDD:238020 19/109 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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