DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VIII and fred

DIOPT Version :9

Sequence 1:NP_001097382.2 Gene:side-VIII / 37310 FlyBaseID:FBgn0086604 Length:1201 Species:Drosophila melanogaster
Sequence 2:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster


Alignment Length:1531 Identity:302/1531 - (19%)
Similarity:460/1531 - (30%) Gaps:587/1531 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 IWYKVGLKTPIYSVDTRDS-------NFAQGTHWSDETY------------------------RE 120
            :|..:||.:...|:|||:.       .|.:....:|.|:                        ..
  Fly    12 LWLSIGLISGDDSLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLFENVAIGDVQLNSNY 76

  Fly   121 RLSFHVEGRAGTLTIKSTTED-DTGEYRCRVDFQKSPTRNSKV-----NLTVIIPPESVIILDSK 179
            ||.|........|.||:|:.: |.|.:.||:   |:....:.|     ||||:..|...::... 
  Fly    77 RLDFRPSRGIYDLQIKNTSYNRDNGRFECRI---KAKGTGADVHQEFYNLTVLTAPHPPMVTPG- 137

  Fly   180 GVTIEDHTLGPYNEGSGINITCVAIGGRPQPRVTWL-HGNTV--------------YKNAS---- 225
                   .|....|...:.:||.:|||.|.|.:||. .|:||              |.||:    
  Fly   138 -------NLAVATEEKPLELTCSSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIV 195

  Fly   226 ----------------------------------------VG--QPLSERR-------------- 234
                                                    ||  .||...|              
  Fly   196 PRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKP 260

  Fly   235 -VGN--------------TLSLARLERRNLHMQLTCRAENNNLTTPIISSVVLDMNLRPLIVKLQ 284
             |.|              |.::.|:.|.:.. :.||.|: |.|.......:|||: |.|.||.::
  Fly   261 MVSNVRWSRNGQYVSATPTHTIYRVNRHHAG-KYTCSAD-NGLGKTGEKDIVLDV-LYPPIVFIE 322

  Fly   285 GENRALSAGNSYQLSCVVIGARPAP-TITWWK-GSTPMKNTHEIATPD----------------- 330
            .:......|.:..:.|.|. |.|:| .:.|.| |:...:.|.|:.|..                 
  Fly   323 SKTHEAEEGETVLIRCNVT-ANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNI 386

  Fly   331 ------------GNLTTSVLT--------FTPTID----DRGKFLSCRAE--------------- 356
                        ||.|.::|.        .||...    ..|..|:|.|.               
  Fly   387 MQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDM 451

  Fly   357 ---------------QSMIPESGMEDGWKLDIYHIPVVSLELGTNSL------------------ 388
                           |..||::.:....|   ||...|: |||...:                  
  Fly   452 DGDIGNTQKILAQGPQYSIPKAHLGSEGK---YHCHAVN-ELGIGKIATIILEVHQPPQFLAKLQ 512

  Fly   389 -NSTLREG-IDVFFECNIKSNPWIYEVSWRHNG-KIL----------TNNPAEGIAVSNQSLVLQ 440
             :.|.|.| :|....|:.|..| ..::.|..:| :||          |...|.|..|:.|| :|:
  Fly   513 QHMTRRVGDVDYAVTCSAKGKP-TPQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQS-ILR 575

  Fly   441 NASRAR----------SGIYTCVGSNREGDGESNPVQLDIRFAP-VCRPRQRLSYSSGRHETVKV 494
            ...:||          .|:|||:..|......|: :.|.|...| |.....:::|.  ..|:.:|
  Fly   576 FRGKARPNGNQLLPNDRGLYTCLYENDVNSANSS-MHLRIEHEPIVIHQYNKVAYD--LRESAEV 637

  Fly   495 ACEIDANPAEATYVWKFN----------------ATQGETVDIPASQVAVDRGRSIAHYTPMTEN 543
            .|.:.|.| :..:.|::.                :|:.|..|:..|.:      .|||   :..:
  Fly   638 VCRVQAYP-KPEFQWQYGNNPSPLTMSSDGHYEISTRMENNDVYTSIL------RIAH---LQHS 692

  Fly   544 DYGTLLCWATNEIGDQSEPCVYTIFPAGEPDPLLNCTVLNQTSTGFQIECIEGFNGG-LQQDFIM 607
            |||..:|.|.|.:.....|  ..:.|.|.|:...|..:|........:....||||| :...:::
  Fly   693 DYGEYICRAVNPLDSIRAP--IRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGFNGGFMSTKYLV 755

  Fly   608 EVYMNGTTRHPKISKSKR----PYFEVSG---------------------LVP---GMGYNVFLI 644
            ......|.|...:|....    |.:::|.                     |.|   ...|...:.
  Fly   756 SYRRVATPREQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVY 820

  Fly   645 ANNSKGRSNATILQVYTLK------------DPEKQTVKITFTKSFQGL---------------- 681
            |.||||.|..:...:.|.|            ||....:.|....:...|                
  Fly   821 ALNSKGTSGYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPM 885

  Fly   682 ---------------------------RPA-YTKTKATATTTSDCV-------CDEDEFLNL--- 708
                                       ||| ||    ||||:...:       ..||..:.|   
  Fly   886 WEIVETLTLLPSGSETTFKEAIINHVSRPAHYT----TATTSGRSLGVGGGSHLGEDRTMALAET 946

  Fly   709 -GKG---------ISHDEGTDADQQEDLSLAYAPVIEDIRPFLGILAGIVGS----IFLVALIIV 759
             |.|         .|:.|...|....::..:|.|....:.. ..::|.|:.|    :||..|...
  Fly   947 AGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPHKSSMTT-SALVAIIIASLSFVVFLGLLYAF 1010

  Fly   760 IVVRVRGSSGRDRNNYSHPGSGVGGVGGVGGTTGNGSGMGGGGGG-------------------- 804
            ...|.:.::.::       .|.||  |||||...|.:...|..|.                    
  Fly  1011 CHCRRKHAAKKE-------SSSVG--GGVGGGNANATANPGSTGAKEYDLDLDASRRPSLSQDPQ 1066

  Fly   805 -------------VGGT-----TANGNGSLGLLAS-----------------NNNGSL------- 827
                         ..||     ..||||.:.|..:                 :|:|..       
  Fly  1067 QSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPKAIL 1131

  Fly   828 -----VIGTLGHNGGQSVQDMHRIGRETCHVTSSLDSIDKNPDIIP--------QDGHDLDDEWT 879
                 |.|:.|:|.|.  |..|..| ...||||::.....:..::|        ..||.      
  Fly  1132 GIYGGVAGSGGNNSGG--QHPHSNG-YGYHVTSAIGVDSDSYQVLPSVANSAAGSHGHG------ 1187

  Fly   880 TKGHGR---------------TYATAAMAEQNAVITSGTYDHL-------MPTYAVVDKKTAPPP 922
             .|||.               |...:..:..|:.|......|.       .||.|......    
  Fly  1188 -SGHGHGLGAGESGPLEATPPTCNISGGSSSNSGINPMQQQHSARANLTNQPTIATASSTN---- 1247

  Fly   923 GHGQYIQYNTLI----------PVSKMGAYANQQQQLQQ-QPQQKTELSYSELSAPLVSGPVGVQ 976
            .:..::. ||.|          ...|.|...|::::.:: |....|..:.:.|:..:.:  ....
  Fly  1248 NYNNHLN-NTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVTAATAATTTALATTITT--TSRN 1309

  Fly   977 RMAPYCSATLGRPGRQAELKRAEPNIYSQVNVMMDDEILADLQAATASGRSYVAGAVVDNVGGAP 1041
            ..|...:.||...|..:   .:..|.||... .:..|.|..||.|||..:               
  Fly  1310 AKAATTTTTLAITGSSS---NSNENNYSNAR-DLSQEALWRLQMATAQSQ--------------- 1355

  Fly  1042 NLYVQGYATRIDLAHHPMPMYSTSPMFGTNSTITGVTMSHPSQLATFSPTPPPPIFTHSMVTTGD 1106
                |.|..|...|...:..||     |.:..|..||.|...|  :||||  ..:..|.|     
  Fly  1356 ----QIYVERPPSAFSGLVDYS-----GYSPHIPTVTSSLSQQ--SFSPT--QQLAPHEM----- 1402

  Fly  1107 GLLQPVTCMGLVATSSAGASVPGPVPLAPQQQQQQQ 1142
              ||.....|.:..|..      ..||.||::..||
  Fly  1403 --LQAAQRYGTLRKSGK------QPPLPPQRKDMQQ 1430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VIIINP_001097382.2 Ig 55..166 CDD:299845 25/115 (22%)
IG_like 60..166 CDD:214653 25/115 (22%)
Ig 182..266 CDD:299845 32/173 (18%)
Ig 296..373 CDD:299845 25/149 (17%)
IG_like 389..464 CDD:214653 25/96 (26%)
IGc2 394..459 CDD:197706 23/86 (27%)
Ig_3 490..554 CDD:290638 18/79 (23%)
fredNP_608812.3 Ig 29..126 CDD:299845 19/99 (19%)
IG_like 141..228 CDD:214653 16/86 (19%)
Ig 147..228 CDD:299845 15/80 (19%)
I-set 232..313 CDD:254352 17/82 (21%)
IGc2 250..302 CDD:197706 9/53 (17%)
IG_like 323..385 CDD:214653 12/62 (19%)
IGc2 330..385 CDD:197706 12/55 (22%)
Ig_2 416..501 CDD:290606 16/88 (18%)
IG_like 418..501 CDD:214653 15/86 (17%)
I-set 505..612 CDD:254352 26/109 (24%)
Ig 526..611 CDD:143165 22/87 (25%)
IG_like 633..715 CDD:214653 20/93 (22%)
Ig 635..713 CDD:143165 19/89 (21%)
FN3 720..838 CDD:238020 22/117 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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