DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MED8 and med8

DIOPT Version :10

Sequence 1:NP_722456.1 Gene:MED8 / 37305 FlyBaseID:FBgn0034503 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_996966.1 Gene:med8 / 404615 ZFINID:ZDB-GENE-040426-2091 Length:267 Species:Danio rerio


Alignment Length:275 Identity:108/275 - (39%)
Similarity:159/275 - (57%) Gaps:34/275 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QRDEKLFELTLDTVLQRLNDLKLAVLSMIQKLELEYETINWPTFLDNFAIISSHLTGLTKILAKE 66
            ||:||..|..|::::.|:..||.::.|.|.|||.||:.:.||:.|||||:||..|..:.|:|..|
Zfish     3 QREEKQLEAFLESLVARVAHLKGSLQSFIYKLENEYDRLTWPSVLDNFALISGQLNTINKLLRNE 67

  Fly    67 QCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVFSHDIVPDYLRTRPDPITEQKMLQNEQKAANL 131
            :.|..:::.::|||:|.|||:.|..:||.|||||||:||||:|||:|||..|::......:||.:
Zfish    68 KTPSYKSQVIIPLLLSPDRDEELAKLTEHRVPVFSHEIVPDHLRTKPDPEVEEQEKHLSAEAARI 132

  Fly   132 TNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADTQLLVAAVGMGKGLKLT 196
            ..:.|.||:...||:.|::|:.::..||:.:.|:|:....:.:.:.|||..||||||.||||...
Zfish   133 GPEVAQKQIQALNKLCSNLLEKLNNPREDRDSETSALRQNKPSFNPADTNALVAAVGFGKGLSKC 197

  Fly   197 NYGPGPGMMVPPSIRAPSPMGGPAMSPGNVQQQL------------------------GKAPSAV 237
            .         ||...||...|.|.|..|...||:                        ||.||.:
Zfish   198 R---------PPGPVAPGHPGQPMMQTGPTLQQVTIAGASGHQAGMSGPVAPQQPGQPGKIPSNI 253

  Fly   238 KTNIKSANQVHPFSR 252
            |||||||: :||::|
Zfish   254 KTNIKSAS-MHPYNR 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED8NP_722456.1 Med8 1..249 CDD:463012 105/270 (39%)
med8NP_996966.1 Med8 3..264 CDD:463012 105/270 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 156..180 4/23 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 227..267 13/40 (33%)

Return to query results.
Submit another query.