DRSC/TRiP Functional Genomics Resources

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Protein Alignment tapas and Tdrd6

DIOPT Version :9

Sequence 1:NP_611475.3 Gene:tapas / 37304 FlyBaseID:FBgn0027529 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_001178512.1 Gene:Tdrd6 / 316254 RGDID:1305956 Length:2136 Species:Rattus norvegicus


Alignment Length:1276 Identity:249/1276 - (19%)
Similarity:402/1276 - (31%) Gaps:433/1276 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 RKKELKKE------DDLDRGQITKEVAREKQKEKETRDRAVTE---TIFVTIENKKAPVMNGHGP 248
            :|..|.||      |..|| |...|:..|.:..:|...:.:.:   ..|...|.|:...::.|.|
  Rat   627 KKTVLHKELVVHILDKQDR-QYVIEILDESRTGEENISKVIAQAGYAKFQEFETKENIRLSAHSP 690

  Fly   249 RHV---------------KVANGQDKHNDGK----PPLRAI--LGN-SASQRQQDTSTVYHSPES 291
            .||               ||...|...||.|    |...|.  |.| |..|..||...|...|..
  Rat   691 GHVSGHFIAESSKIPSVKKVEGDQKAKNDNKTLSDPEALATVSLSNISTGQTAQDKEKVTSDPTL 755

  Fly   292 SFKR--PRHPRVMYPGHQR---TTGVSVNH---------RLKVTPQ-------------SDAPTP 329
            ....  ...|.....|...   |..|.|:|         :|....|             ...|:|
  Rat   756 LMLNLLKTKPDCCGKGELEVGSTVEVKVSHIENPGSFWCQLMRNAQGFRTLMCDIEDYCKSEPSP 820

  Fly   330 AVAPITPPASPEYAQTTTA--AKAT-----YKEDIHGGQG-ETGNVV---TNPKVKVPLKFDPSL 383
                        |...|.|  ||.|     .:..|.|.|. |...||   ...|..|.:|   .:
  Rat   821 ------------YEGDTRACLAKRTANGRWSRALISGAQSLEHVRVVFVDYGDKDVVSMK---DI 870

  Fly   384 DPVSTLNFYCAANDFEKPAYNIFNKLRNLHCSVQIAGD---VYSSYP-QEFTD-KETAYQRTAQI 443
            ..||.:.|...|..|....||:          :|..|:   |:.... |.||. .:.|:|...::
  Rat   871 LSVSDVFFKVRAQAFRCSLYNL----------IQPTGENPFVWDERAIQAFTGFIDNAWQNNLEL 925

  Fly   444 AIQRIMHAQSHQK------------LSACTFSDVEFIDGLYKELLKHPHGIL-----GHKLEDWY 491
            .......|..|::            .|||.|        |.::.|..|..:.     ..:|..:|
  Rat   926 KCTIFALASRHEEECFNVVDLLTPFQSACHF--------LVEKRLARPVKLQKPLEPSVQLHSYY 982

  Fly   492 GSTFRQHLPSHWYDLIVKSNK-IRVEHGIDPRIILFANDPGSSEPDRTSITTLPQMVLPWQSSEG 555
            .||         :||.:.|.: :.:.|..||                                  
  Rat   983 YST---------HDLKIGSEELVYITHADDP---------------------------------- 1004

  Fly   556 GSHDWNMFISFCDSTKIVWARMIDQIANFEELTKHIGRQMESPHFRQKVSKPYAQEVYLVEMPDG 620
                |..:.....:|.|:           |:|:.|| .|:.......:.|......:.|.:..||
  Rat  1005 ----WTFYCQLARNTNIL-----------EQLSYHI-MQLSKVLLNLRTSTLVPGTLCLAKYTDG 1053

  Fly   621 WNRVRAISVDEETRSGRYHFIDFGDVAMFHSEDLFHCPP---QFLALPAQAVCLSMYALDKFEDH 682
             |..|.|.:::|  ..:..|:|||:..: .|:.|...|.   ..|.||.|||..|:      .|.
  Rat  1054 -NWYRGIIIEKE--PSKVFFVDFGNTYV-ASDHLLPIPRDAYDVLLLPMQAVKCSL------SDI 1108

  Fly   683 PHALQ-------------------VLTKELDGQTVVA---------------------------- 700
            ||.:.                   |:.|:.||:.::.                            
  Rat  1109 PHHIPEEVTAWFQETVLDKSLKALVVAKDPDGRLIIELYDESVQINASINEKLGLLGYKNRTRRK 1173

  Fly   701 ----HVLTTEKQFLE-------------LGGS----AQGV-------------------VENGKR 725
                .::..|.:.|:             ||.|    |.||                   ...|..
  Rat  1174 DKENEIILRETETLQDKAEIMKPSPTDYLGKSGDSKAHGVEIMGESCKPKLSPACKELKYLQGSG 1238

  Fly   726 RACLVATLYDTS----------TAEDIHLNDLVAKRITKCTPAPSLSDEKKIGKT---------- 770
            :|.||....|:.          |.|  ...|:.|......|...|...|:::|:.          
  Rat  1239 KAHLVTPYQDSMGNKNDGGFLLTRE--KREDMFASSPMSATKLESALPERRMGEASGKDLPPKFC 1301

  Fly   771 ------------TPILVSHINDDGDLMVLLRNDDLKFVERSIAQTVADLGEQDRVSYSDLLHDRH 823
                        |.:.||||||..|..:.|..|:.:.  ..:::.:.|:  :.|..|    |...
  Rat  1302 EFPQKTIAPGFKTSVYVSHINDLSDFYIQLIEDETEI--NRLSERLNDV--RTRPQY----HTGP 1358

  Fly   824 IFVCDETVDGV----KQWFRGRLVTRPLNPDEESFDVYYVDDGRQRKAHISNIYRLEANNRALAT 884
            .:...:.:..|    ..|:|..::.:..|   :...|.::|.|.....|.:...||.        
  Rat  1359 PWQSGDVICAVFPEDNLWYRAVVLEQQHN---DLLSVQFIDYGNMSVVHTNRTGRLG-------- 1412

  Fly   885 FPPQAIPVRLHDVPEIGGHMLH-RLRGLIPWRTEALLKVVAMDGGKPLVNVFIREDPESMYMC-- 946
             |..|:      :|.:   .|| .|||::         |..:.|.|.:|..|.:...|:...|  
  Rat  1413 -PIDAV------LPAL---CLHCSLRGIV---------VPDIVGTKEMVAYFSQRTDEAQIRCEF 1458

  Fly   947 VNIGLRLELEMASSIHPEKYDHTLLSSNV--QLPRRGSFSSVFSNQSSSSDLVATTPPVTPEKKP 1009
            |......|:.:|.       :|.:::.::  :.|..|...:..:.||...|.          .|.
  Rat  1459 VKFQGTWEVILAD-------EHGIIAEDIINRFPFNGKSQAGLTTQSMKGDC----------SKT 1506

  Fly  1010 SARSTGSTFSSL--------MLKDYEAIPAVGAYFEVRVALSVNPGHFAVQPYKYY-NQLQTLMK 1065
            :.::...|...|        ::|.|..:.....||..:.|.|        :..:|. .::|...|
  Rat  1507 ALKTNMDTSVFLNWYNPKMKLIKAYATVIDGPEYFWCQFADS--------EKLQYVETEVQNAAK 1563

  Fly  1066 NLQEHCQKTAAKGVQPSQLAIGE-AYAAPDSEGVYHRVSIHKIYDE-IIHVRFVDVGD-DGVIAC 1127
            .|.:  :|:..:..|     ||: .......:|.|:|..|..|.|: :..||.||.|: :..:..
  Rat  1564 QLAD--RKSCTQCPQ-----IGDPCIVRYREDGHYYRALITNICDDHLASVRLVDFGNVEDCVDT 1621

  Fly  1128 DQLKTLNPELRKLPKMALPAQLYGIQLT-------------DVVWSKENCVRFRELSLGQKFIGI 1179
            :.|.::..||..:|..|.|..|.|..::             |:|  .|:.:....|.:.:....|
  Rat  1622 NALWSIPSELLLVPMQAFPCCLSGFTVSGGVCPQEGNDYFYDIV--TEDVLEITILEIKRDVCDI 1684

  Fly  1180 VRRMTKQKDGGRAL---CLELVDTSTPKDIKLHEILINEKH 1217
            ...:.:.:..|..:   ..:...|.|||     ..|.:|||
  Rat  1685 PLAVVELRSKGENINEKMKKYAKTGTPK-----SGLYSEKH 1720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tapasNP_611475.3 LOTUS_TDRD_OSKAR 7..92 CDD:193586
TUDOR 563..673 CDD:278965 28/112 (25%)
TUDOR 766..896 CDD:278965 27/155 (17%)
TUDOR 1032..1151 CDD:278965 30/122 (25%)
TUDOR 1087..1131 CDD:119391 12/46 (26%)
Tdrd6NP_001178512.1 TUDOR 10..133 CDD:278965
TUDOR 245..379 CDD:278965
TUDOR 313..359 CDD:119391
TUDOR 489..610 CDD:278965
TUDOR 547..591 CDD:119391
TUDOR 775..891 CDD:278965 28/130 (22%)
TUDOR 827..870 CDD:119391 13/45 (29%)
TUDOR 988..1107 CDD:278965 35/178 (20%)
TUDOR 1043..1085 CDD:119391 13/45 (29%)
TUDOR 1310..1429 CDD:278965 30/147 (20%)
TUDOR 1363..1407 CDD:119391 8/46 (17%)
TUDOR 1523..1645 CDD:278965 32/136 (24%)
TUDOR 1578..>1616 CDD:119391 12/37 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR22948
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4998
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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