DRSC/TRiP Functional Genomics Resources

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Protein Alignment tapas and SND1

DIOPT Version :9

Sequence 1:NP_611475.3 Gene:tapas / 37304 FlyBaseID:FBgn0027529 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_055205.2 Gene:SND1 / 27044 HGNCID:30646 Length:910 Species:Homo sapiens


Alignment Length:656 Identity:126/656 - (19%)
Similarity:227/656 - (34%) Gaps:208/656 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   686 LQVLTKELDGQTVVAHVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDTSTAEDIHLNDLVAK 750
            :|::.:....|.::..:|.......||      :::.|..|....:....|..||.:...:..||
Human   261 VQIILESCHNQNILGTILHPNGNITEL------LLKEGFARCVDWSIAVYTRGAEKLRAAERFAK 319

  Fly   751 ----RITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMVLLRNDDLKFVERSIAQTVADLGE-- 809
                ||.:...||:.:.::|..:....::..:|.|. ::|.|.:.|.|.:..|..:.....||  
Human   320 ERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADA-IVVKLNSGDYKTIHLSSIRPPRLEGENT 383

  Fly   810 QDRVSYSDLLHD-RHIFVCDETVDGVKQWFRGRLV----------TRPLNPDEESFDVY------ 857
            ||:......|:| .::|       ..:::.|.:|:          .||.:|..|:...:      
Human   384 QDKNKKLRPLYDIPYMF-------EAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCA 441

  Fly   858 -----------------------YVDDGRQRKAHISNIYRLEA----NNRALATFPPQAIPVRLH 895
                                   |..|..||.:|...:...||    |.:.|.:  .:.:|:  |
Human   442 TVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHS--KKEVPI--H 502

  Fly   896 DVPEIGGHMLHRLRGLIPW-----RTEALLKVV-------------------------------- 923
            .|.:|.|. ..:.:..:|:     |:||:::.|                                
Human   503 RVADISGD-TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARN 566

  Fly   924 ---AMDGGKPL---VNVFIRE---------DPESMYMCVNI-------GLRLELEMASSIHPEKY 966
               .:..|:|.   ..:|.:|         :.|||....|.       |..|.:.:.        
Human   567 LPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLV-------- 623

  Fly   967 DHTLLSSNVQLPRRGSFSSVFSNQSSSSDL------------VATTPPVTPEKKPSARSTGSTFS 1019
            :|.|...:....|...:.|:.|.:.::...            |....||..||:.||        
Human   624 EHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSA-------- 680

  Fly  1020 SLMLKDYEAIPAVGAYFEVRVALSVNPGHFAVQPYKYYNQLQTLMKNLQ-EHCQKTAAKG-VQPS 1082
                          :|..|.|....:..||.||..:...||:.||:|:: :.......:| ..|.
Human   681 --------------SYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPR 731

  Fly  1083 QLAIGEAYAAPDSEGVYHRVSIHKIYDEI-IHVRFVDVGDDGVIACDQLKTLNPELRKLPKMALP 1146
            :   ||...|...:|.::|..:.|:.... |||.::|.|:..|:...:|.||:|   ......||
Human   732 R---GEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSP---AFSTRVLP 790

  Fly  1147 AQLYGIQLTDVVWSKENCVRFRELSLGQKFIGIVRRMTKQKDGGRALCLELVDTSTPKDIKLHEI 1211
            |     |.|:..::               ||.:     .|.|..|.   :.|| |..:||:..:.
Human   791 A-----QATEYAFA---------------FIQV-----PQDDDART---DAVD-SVVRDIQNTQC 826

  Fly  1212 LINEKH 1217
            |:|.:|
Human   827 LLNVEH 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tapasNP_611475.3 LOTUS_TDRD_OSKAR 7..92 CDD:193586
TUDOR 563..673 CDD:278965
TUDOR 766..896 CDD:278965 31/175 (18%)
TUDOR 1032..1151 CDD:278965 33/121 (27%)
TUDOR 1087..1131 CDD:119391 12/44 (27%)
SND1NP_055205.2 SNc 21..166 CDD:214615
SNc 26..166 CDD:238102
SNc 193..328 CDD:214615 14/72 (19%)
SNc 201..328 CDD:238102 14/72 (19%)
Nuclear localization signal. /evidence=ECO:0000255 321..325 0/3 (0%)
SNc 341..495 CDD:214615 29/161 (18%)
SNc 350..496 CDD:238102 29/155 (19%)
Nuclear localization signal. /evidence=ECO:0000255 388..392 0/3 (0%)
SNc 525..660 CDD:214615 19/142 (13%)
SNc 533..660 CDD:238102 16/134 (12%)
TUDOR 677..799 CDD:278965 37/154 (24%)
TUDOR 728..784 CDD:197660 17/61 (28%)
SNc <844..895 CDD:294094
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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