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Protein Alignment CG11200 and Cbr1

DIOPT Version :9

Sequence 1:	NP_001286630.1	Gene:	CG11200 / 37301	FlyBaseID:	FBgn0034500	Length:	355	Species:	Drosophila melanogaster
Sequence 2:	NP_062043.1	Gene:	Cbr1 / 29224	RGDID:	2286	Length:	277	Species:	Rattus norvegicus

Alignment Length:	295	Identity:	83/295 - (28%)
Similarity:	129/295 - (43%)	Gaps:	70/295 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    67 DR-IAVITGGNRGIGLRIVEKLLACDM---TVVMGVRDPKIAETAVASIVDLNATKG-KLICEQL 126
            || :|::||.|:|||..||..|  |..   .||:..||......||..:    .|:| .....||
  Rat     4 DRPVALVTGANKGIGFAIVRDL--CRKFLGDVVLTARDESRGHEAVKQL----QTEGLSPRFHQL 62

  Fly   127 DVGDLKSVKAFAQLIKERYSKVDLLLNNAGIMF-----APFKLTADGYESHFAINFLGHFLLTHL 186
            |:.:.:|::|....:.:.|..:::|:|||||.|     .||.:.|   |.....||.|...:...
  Rat    63 DIDNPQSIRALRDFLLQEYGGLNVLVNNAGIAFKVVDPTPFHIQA---EVTMKTNFFGTQDVCKE 124

  Fly   187 LLPQLRAAGKEGRNSRIVNVSSCVN------------------------LIGRIN------YKDI 221
            |||.::..|      |:|||||.|:                        |:|.:|      .|.:
  Rat   125 LLPIIKPQG------RVVNVSSSVSLRALKSCSPELQQKFRSETITEEELVGLMNKFIEDAKKGV 183

  Fly   222 NGTKHYYPGTAYSQSKLAQILFTRHLQTLLDAEK--SHVQVNVVHPGIVDTDLFEHSATTSVPIF 284
            : .|..:|.:||..:|:...:.:|.....|:.|:  ..:.:|...||.|.||:....||
  Rat   184 H-AKEGWPNSAYGVTKIGVTVLSRIYARKLNEERREDKILLNACCPGWVRTDMAGPKAT------ 241

  Fly   285 KKLFFKTPERGSRTVVF-AAIDPSIEGQGGTYLSN 318
                 |:||.|:.|.|: |.:.|..||..|.::.:
  Rat   242 -----KSPEEGAETPVYLALLPPGAEGPHGQFVQD 271

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.