DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8908 and abca4

DIOPT Version :10

Sequence 1:NP_611464.3 Gene:CG8908 / 37293 FlyBaseID:FBgn0034493 Length:1626 Species:Drosophila melanogaster
Sequence 2:NP_001011033.1 Gene:abca4 / 496442 XenbaseID:XB-GENE-1000810 Length:2359 Species:Xenopus tropicalis


Alignment Length:1897 Identity:437/1897 - (23%)
Similarity:760/1897 - (40%) Gaps:509/1897 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 YVGIEFDDSFSDINELPINVTVGLRFPLHLRKNPKMVWDNTSILKHSKMDVDYYQ-------VE- 180
            :.|:.|.|.|...|.||.:|...:|.            |..::.|.:|:...|:.       || 
 Frog   548 WAGLVFLDMFPWTNTLPSHVKYKIRM------------DIDAVEKTNKIKDRYWDPGPRADPVED 600

  Fly   181 ------GFLVVQAKLSEALIRAKNEAVVLPEVILQHYPDVAEVDRLD----NRVALGGVLFLPVT 235
                  ||..:|..:...:|:::....|...:.||..|....||.:.    ||.       .|:.
 Frog   601 MRYIWGGFAYLQDMIDHGIIKSQTSTEVPAGIYLQQMPYPCFVDDVFMITLNRC-------FPIF 658

  Fly   236 I------SAAYLAQMIVMERRDHLRDMLELMGVRAWIYWLSWFLVAFLLLSIPTVFM-VLLLKWR 293
            :      |.:.|.:.||:|:...|::.::.|||...:.||:.|:.:|.:::..|:.: |:::...
 Frog   659 MVLAWIYSISMLVKDIVLEKELRLKETMKNMGVTNDVIWLTRFIDSFTVMTTSTILLTVVIVVGG 723

  Fly   294 YFSLSDSSLVLFFLLVYNLEVLTSAFMISSFFSDT------VGV-QVAIVIVHLIGCLPWRLLLM 351
            ....|:..::..||:.:.:..:..||::|.|||..      .|| ...:.:.|:: |..|:..:.
 Frog   724 VLHYSNPIILFCFLMAFTIATIMQAFLMSVFFSKANLAAACSGVIYFTLYLPHIL-CFAWQDRMT 787

  Fly   352 GYVPTLPRTIFVCLFLNS-SLAMGLQQFIKSENLRLGLHWTYLFER-TDWDEFVHLGPILLFMLF 414
            ..:.||      ..||:. :...|.:...:.|...|||.|..:.:. .:.||:..|..|.: ||.
 Frog   788 IKLKTL------ASFLSPVAFGFGTEYLSRYEEQGLGLQWGNIRKSPMEGDEYSFLFSIFM-MLL 845

  Fly   415 GCLLRILVLAYMEQLRSYQ---NRKWYFPVQPSFWCRW--------------------------- 449
            ...:...:..|::.:...:   .:.||||...::||::                           
 Frog   846 DAFIYWTLAWYIDHVFPGEYGIPKPWYFPFLATYWCKFEHEFGGDADSIETELSIHEHIEENHIE 910

  Fly   450 -----------------------------------------------------NRRPRSDDFDVE 461
                                                                 ..:.|:|..|::
 Frog   911 PTDNQPEALPDGVKEEAEKSVKQDDIIVNKDSSACKHKVKKEKEQEEKQRKDEQEKERNDKDDMK 975

  Fly   462 GQETGIRGHPLI----------VRARNIEKVFNEWI--AVKDLNLNFYQDEITVFLGHNDSGKST 514
            ...|.| |:|..          |..:::.||:....  ||..:|:.||:.:||.|||||.:||:|
 Frog   976 DGFTYI-GNPFFEPEPPGMVPGVYIQDLVKVYENTYKPAVDRMNITFYEGQITAFLGHNGAGKTT 1039

  Fly   515 ILMLLAGFLRPSAGEITINGYDLATNQRKARQSMCICPQPNVLFEKVNARWHLQFYCRLKGLNRQ 579
            .|.::.|...|::|.:.:.|.|:.|:....|||:.:|||.|:||..:....|:.||.:|||.:|:
 Frog  1040 TLSIITGLFPPTSGTVWVRGRDIQTHMDSIRQSLGMCPQHNILFRHLTVEEHILFYAQLKGKSRK 1104

  Fly   580 EASAETDKYLEIGRLQDFANTKVKNLPSGIKRMLMLCCNLCGNSKILLLDEPGTSMDPAMRSNMW 644
            :|..:.:..||...:....|.:.:||..|::|.|.:.....|.||:::||||.:.:||..|.::|
 Frog  1105 QAERQAEVMLEDMGIPHKRNDEAQNLSGGMQRKLSVALAFVGESKVVVLDEPTSGVDPYSRRSIW 1169

  Fly   645 DLLRRERKGRCIIMATHNMNEAEVVADQIVVLCDAQVIGYGTTGFLTQIAGTGSSYLLICTKM-- 707
            |||.:.|.||.||::||:|:||:::.|:|.::...::...|:..||....||| .||.:..:|  
 Frog  1170 DLLLKYRSGRTIILSTHHMDEADLLGDRIAIVSQGKLFCSGSPLFLKNCFGTG-FYLTLVRRMRN 1233

  Fly   708 --DT------------------CI---------------VAEVTNFLQIRFPDIKLHNEFSIYVT 737
              ||                  |.               |:.:|..:....|:.||.......:.
 Frog  1234 IKDTGKKDSASCQSDCSCPCSSCTPKVKENLLEQELDGDVSGLTELIHHHVPEAKLLESIGQELI 1298

  Fly   738 YELPTK--YVQQYAALFLELEEALGELNLAEISVCAPTLGSVFLQM------GEEMRQSW---NR 791
            |.||:|  ..:.||:||.||||.||:|.|:...:....|..:||::      |.|..:.|   .|
 Frog  1299 YLLPSKDFKFRAYASLFRELEETLGDLGLSSFGISDTPLEEIFLKVTADSVTGTETPEEWMLQQR 1363

  Fly   792 ISSFDL-LSSPSPMLSLLNL------------------LPTFEVREDDGR----VK----CCNQW 829
            .|...| :.:.:.::::.|.                  .|....||.|||    :|    ...|:
 Frog  1364 KSRTSLGVDNQTTVINIDNKGQESSIRKDSHHCKAEKNPPNINDREADGRGSRQIKGTELLQQQF 1428

  Fly   830 RAIVEKK-RLFTLRHQKFYCMIIATPIIICLLIISFSIFIFLVDHHLSELLVTDLSIYP------ 887
            .|::.|: :..|..|:.|:..|: .|....||.:.|::.:.....:.|      |:::|      
 Frog  1429 NALIIKRFKHATRSHKDFFAQIV-LPASFVLLALVFTLIVPPFGEYPS------LTLHPWIYGQQ 1486

  Fly   888 -------------KAVF---VIDSPAEGNR------FERHY-----------------MANVI-- 911
                         .|.|   .::||..|.|      ..:.|                 :.|::  
 Frog  1487 FVFFSNEQPGNEQMATFSNAFLNSPGLGTRCMKDQPLSKKYQCTNTSNEWTMPAVSPSVTNMLLS 1551

  Fly   912 ----------------------------GQGG------------TVRSTSGTPIDDYLL------ 930
                                        |.||            .::..:...|.|:||      
 Frog  1552 QEWTRDNPSPSCTCSSRSKLMMLPECPEGAGGRPPPQRIQPSSEIIQDLTERNISDFLLKTYPDL 1616

  Fly   931 --AEMES--------------------------------DQVKVQHTFLAGA----------TFD 951
              :.|:|                                .||.......||.          ||.
 Frog  1617 IRSSMKSKYWVNEQRYGGISVGGKLPVLHVKGGDIVSFFSQVGQMTNVTAGTTTKAISQELQTFL 1681

  Fly   952 SN---ANSIIAWSNNKLKHGSALSMGLVYAAI-------GQELAKLDIRIVNKPYQDTVQQAVRG 1006
            .|   .::|..|.|||..|...:.:.:...||       .::..:..|..:|.|...|..|....
 Frog  1682 QNLETEDNIKVWFNNKGWHSMVIFINVANNAILRANLGADKDPEEFGITTMNHPLNLTKDQLSEV 1746

  Fly  1007 LIYASTIE--FAVLVFHYLVLGTAIFAVLPIVERRSKVQHQQFSSGMSRSTYWLSHLSWD---YC 1066
            .:..::::  .|:.|...:....|.|.:..|.||.|..:|.||.||::.:.|||::.:||   |.
 Frog  1747 TVLTTSVDVVVAICVIFAMSFIPASFVLYLIQERVSNAKHLQFVSGVTPAIYWLTNFAWDIINYA 1811

  Fly  1067 FYIAMILPLIVVA----GITIGSVLPVIVQLLAF-GFSAISF----TYLLCLMSNDFGKMFSIIL 1122
            ..:||:: :|.:|    ..|..|.||.::.||.| |::.|..    :||..:.|..:..:..|.|
 Frog  1812 ISVAMVV-IIFIAFDKKAYTSSSNLPALIALLFFYGWAVIPMMYPASYLFNVPSTAYVALSCINL 1875

  Fly  1123 YINMIG-----VLALFIHPKSPQTRYAVIESVLLVHPHYSLCCG-----MYEAIR---------- 1167
            :|.:..     :|.||.:.:|.......::.:||:.||:.|..|     |.:|:.          
 Frog  1876 FIGINSSAITFILDLFENNRSLLKFNEKLKDLLLIFPHFCLGRGLIDLAMNQAVTDVYARFGEEH 1940

  Fly  1168 -MSTFSLKQLPYLIFS----GAAYLTIVVFAWVPRRLNYVFKSIRNEKIYPSYKDEDKEVDKMRR 1227
             .:.|..:.|...||:    |..|.|:.:.  :..|  :.|.:..:|......:.||::|.:.|:
 Frog  1941 VSNPFQWEFLGRNIFAMAVEGVVYFTLNLL--IQHR--FFFSTWFSEPPKGLVEGEDEDVAQERQ 2001

  Fly  1228 RLAYLTTAHYAFFPLILKNLSKRY--GSFVAVRSLTLDLNPFECVGLLGRNGSGKSSIFRMIVGM 1290
            |:......:..   |.||.|:|.|  ....||..|.:.:.|.||.||||.||:||::.|:|:.|.
 Frog  2002 RVIKGGGKNDI---LKLKELTKTYPGKQSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD 2063

  Fly  1291 ESITVGSIHIKGYSLKTRPKDASRHVGFCPRELMLLSFMTGKDALRFCCLINGIRREYIKSLVAS 1355
            ..:|.|...:.|||:.....|..::.|:||:...:...:||::.|:....:.|:..:.|..:...
 Frog  2064 IQVTSGDASVAGYSILQDIADVHQNSGYCPQFDAIDDLLTGREHLQLYGRLRGVPEDEIDMVADW 2128

  Fly  1356 LAECFELVPHMNKRISTYSNGTKRKLMIAMGTL-APSLMCLDEPTAGVDMHAKYEIWSILDGIRQ 1419
            ..|...|..:.:....|||.|.||||..|:..: .|.::.|||||.|:|..::..:|:.:..|.:
 Frog  2129 GIEKLGLGKYADNLTGTYSGGNKRKLSTAIALIGCPPVVLLDEPTTGMDPQSRRFLWNSIVSIIK 2193

  Fly  1420 GGRSILLTTHNLEECEFLCTNVGIMDHGSLLCYGSLSRLKHRFNMGIFVKVKMGTRAEMDDERDN 1484
            .||:::||:|::||||.|||.:.||..|:..|.|::..||::|..|..|.:|             
 Frog  2194 EGRAVVLTSHSMEECEVLCTRLAIMVKGTFKCLGTIQHLKYKFGDGYIVTMK------------- 2245

  Fly  1485 WMQITMMPPNDSEMGSTVGARRMMLAHLLRHHNPPVEPVKKSRTSRAQPDTTNSELNMRKDYEAL 1549
                             |.|.:..||       |...||                          
 Frog  2246 -----------------VRASKPGLA-------PDPGPV-------------------------- 2260

  Fly  1550 LQELEEVFKKDHPYSTVSEKYSYRGMITFCIPRGQIKWSAIFEYMENLKDEMQILYYSVSHTTFQ 1614
                |:..:.:.|.|...||  :..|:.:.:....:  :.:|:.:.:.||.:.|..||||.||..
 Frog  2261 ----EKFIQTNFPGSVQREK--HYNMLQYQLSSSSL--ARVFQLLISNKDSLNIEEYSVSQTTLD 2317

  Fly  1615 DVFMKFVRKQNQ 1626
            .||:.|.::|.:
 Frog  2318 QVFVNFAKQQTE 2329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8908NP_611464.3 rim_protein <124..1626 CDD:130324 437/1895 (23%)
abca4NP_001011033.1 rim_protein 1..2347 CDD:130324 437/1897 (23%)

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