DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8908 and CG6052

DIOPT Version :10

Sequence 1:NP_611464.3 Gene:CG8908 / 37293 FlyBaseID:FBgn0034493 Length:1626 Species:Drosophila melanogaster
Sequence 2:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster


Alignment Length:1800 Identity:473/1800 - (26%)
Similarity:839/1800 - (46%) Gaps:307/1800 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LLWLVICKTARFQFSNTLTSVIIIVGPIVVFLVYAATALFREPQEETSVKYPPVNI--------- 71
            |:|    |....|::..:..|..:|.|::...:.....:...|::...::||.|:|         
  Fly    25 LMW----KNWILQWNQKMQIVFALVLPVLFLCLILVLRIIVLPEKMDEIRYPTVSISDLNLYMRM 85

  Fly    72 ------------TTKVP--YIYYSPENLVLAAVIEDVVHDLKAVGSKAFASASELNKALIGKDTY 122
                        :..:|  ::.|:|.|.:.:|::......|:.:|::|:.:|..:.:.::   .:
  Fly    86 VPLGNRILHENGSLNIPRNFLCYTPNNPINSAIVGATAIRLRLLGTRAYDTALHMEQDMV---LH 147

  Fly   123 GYV-GIEFDDSFSDINE----LPINVTVGLRFPLHLRKNPKMVWD--NTSIL--------KHSKM 172
            .:: |::|:|: .::|.    .|:|:...||||..||.....:.|  .||.|        ..:::
  Fly   148 NFLAGVQFEDN-ENVNTNDAGYPLNLNYSLRFPSELRTMQGPIIDTWRTSRLFLSYDTSGSRNRL 211

  Fly   173 DVD-----YYQVEGFLVVQAKLSEALIRAKNEAVV---LPEVILQHYPDVA-EVDRLDN--RVAL 226
            |.|     .|..||||.:|..|:.:.: |....|.   :|.:.||.:|..| ..|:|.:  |..|
  Fly   212 DNDGGVPVGYIREGFLPIQHALTMSWL-ALASGVTDTGIPAIHLQRFPYRAYTYDQLLSGLRQLL 275

  Fly   227 GGVLFLPVTISAAYLAQMIVMERRDHLRDMLELMGVRAWIYWLSWFLVAFLLLSIPTVFMVLLLK 291
            ..|:.|.....|:.:.:.:..|:...|:::::|:||..|::|::||:.::::|.:....::.|:.
  Fly   276 PFVILLSFIYPASTVTKYVTSEKELQLKEIMKLIGVHNWLHWVAWFVKSYIMLMLVVFLIMSLIM 340

  Fly   292 WRYFS----LSDSSL--VLFFLLVYNLEVLTSAFMISSFFSDTVGVQVAIVIVHLIGCLPW---- 346
            .::::    |:.||.  ||.||..|.:..:...||::..||..........|...:..:|:    
  Fly   341 VKFYASVAVLTFSSWVPVLLFLHTYVVTSVCLCFMLAVLFSKASTASAVAAIFWFLTYIPYSFGY 405

  Fly   347 ----RLLLMGYVPTLPRTIFVCLFLNSSLAMGLQQFIKSENLRLGLHWTYLFERTDWDEFVHLGP 407
                ||.||.      :.:...:|.||:|..|:...:..|....|:.|..:|.....|:.:.|..
  Fly   406 YYYERLSLMS------KLLISLIFSNSALGFGIHVIVMWEGTGEGITWRNMFHPVSTDDSLTLFY 464

  Fly   408 ILLFMLFGCLLRILVLAYMEQLRSYQ---NRKWYFPVQPSFW----------------------- 446
            |::.|.||.::.|.:..|:||:...:   .|:|.|....::|                       
  Fly   465 IIMTMSFGSIMFISICLYVEQVFPGEYGVPRRWNFMCHKNYWRQYVPSLNIVPSFQTILHGSAKA 529

  Fly   447 --CRWNRRPRSDDFDVEGQETGIRGHPLIVRARNIEKVFNEWIAVKDLNLNFYQDEITVFLGHND 509
              ||            ..:|.||       :..|::|.:.:..|||.::|..:::||||.||||.
  Fly   530 KSCR------------RAREVGI-------QLFNLQKNYGKLKAVKGISLKMHRNEITVLLGHNG 575

  Fly   510 SGKSTILMLLAGFLRPSAGEITINGYDLATNQRKARQSMCICPQPNVLFEKVNARWHLQFYCRLK 574
            :||:|.:.::.|.::|::|...:||||:.|:..|||:|:.||||.|:||::::.|.|:.|:.:||
  Fly   576 AGKTTTINMITGIVKPTSGTAIVNGYDIRTHLAKARESLGICPQNNILFKEMSVRDHIIFFSKLK 640

  Fly   575 GLNRQEA-SAETDKYLEIGRLQDFANTKVKNLPSGIKRMLMLCCNLCGNSKILLLDEPGTSMDPA 638
            |:...:| ..|..||:.:.:|||.:....|||..|:||.|.|||.||||:|::|.|||.:.:|.|
  Fly   641 GIRGTKAVENEVGKYMTMLKLQDKSYVAAKNLSGGMKRKLSLCCALCGNAKVVLCDEPSSGIDAA 705

  Fly   639 MRSNMWDLLRRERKGRCIIMATHNMNEAEVVADQIVVLCDAQVIGYGTTGFLTQIAGTGSSYLLI 703
            .|.::||||:.|:.||.|::.||.|:||:|:.|:|.:|.:.::...||:.:|.:..|||  |||:
  Fly   706 GRRSLWDLLQSEKDGRTILLTTHYMDEADVLGDRIAILSEGKLQCQGTSFYLKKRFGTG--YLLV 768

  Fly   704 CTKMDTCIVAEVTNFLQIRFPDIKLHNEFSIYVTYELPTKYVQQYAALFLELEEALGELNLAEIS 768
            |.....|.|..||..::...|.||........:||.|||:|.:::|.|..:|:|...:|.|....
  Fly   769 CIMQSGCDVGAVTQLIRKYVPPIKPERVLGTELTYRLPTEYSKKFAELLQDLDEKCAQLQLVGYG 833

  Fly   769 VCAPTLGSVFLQMGEEMRQSWNRISSFDLLSSPSPM---LSLLNLLPTFEVREDDGRVKCCNQWR 830
            :...||..||:.:..:.|....        :...|:   :....|:...:.||.....:|...|:
  Fly   834 LSGATLEDVFMAVNTDKRVQGG--------AEGPPVDGSIDFKELVFDSKTREKRRIRRCFMFWQ 890

  Fly   831 AIVEKKRLFTLRHQKFYCMIIATPIIICLLIISFS----IFIFLVDHHLSELLVTDLSI--YPKA 889
            |:..||...|.|:.....:.:..||.:..|.|..|    |:.        ||....:||  |..|
  Fly   891 ALFLKKFYTTTRNYWLLGIQLVLPIAVMALTILNSRGGRIYY--------ELPAMPISINQYSSA 947

  Fly   890 VFVID--------SPAEG-NRFERHYMANVIGQGGTVRSTSGTPIDDYLLAEMESDQVKVQHTFL 945
            ..|::        |.|:. ::...||....     |:..|.....:||:|:...:...::...||
  Fly   948 YVVLEDNTTDKTSSLADAYSKHLEHYARRC-----TLLRTGDLKFEDYILSHDVNHSRRIDFHFL 1007

  Fly   946 AGATFDSNANSIIAWSNNKLKHGSALSMGLVYAAIGQELAKLDIR--IVNK--PYQDTVQ--QAV 1004
            ||.|.  :.|:.|.|.|||..|.:.|::.|::.|:..:|...|..  :.|:  ||.|..:  :..
  Fly  1008 AGLTV--SENNFIVWLNNKPLHTAPLTLNLLHNALAIKLLGQDASTYVTNEPLPYSDDTRTLRLN 1070

  Fly  1005 RGLIYASTIEFAVLVFHYLVLGTAIFAVLPIVERRSKVQHQQFSSGMSRSTYWLSHLSWDYCFYI 1069
            :|.:..:.|...:.:....:  ||.:|:..|.||.::.:..||.||:....||.||:.|||..::
  Fly  1071 KGQVLGAEISINLSLTMCFI--TAFYAIPIIRERETRAKLLQFLSGVDVCAYWTSHIVWDYLVFV 1133

  Fly  1070 AMILP--LIVVAGITIGSVLPV-----IVQLLAFGFSAISFTYLLCLMSNDFGKMFSIILYINMI 1127
            ...|.  |.:.|...||.:.|:     ...||.|||..|..:|......:|....|:.|..||.:
  Fly  1134 LSALSSILTIAAFKEIGYITPLDLSRYFYMLLIFGFPGIMLSYAASGCFSDAATGFTRISIINTL 1198

  Fly  1128 ---GVLALFIHPKSPQTRYAVIESVLL----VHPHYSL--------------------------- 1158
               |:..:|:.......:...:...|.    :.|||||                           
  Fly  1199 MGTGLFLMFMTLNFEAFQLKDVAEKLAWYFRLSPHYSLASSTHSIHIGYNIRRGCSIGGIRKLPK 1263

  Fly  1159 ---------CC---GMYEAIRMSTFSLKQLPYLIFSGAAYLTIVVF------AWVPRRLNYVFK- 1204
                     ||   |.|...:...  |.::.|:|..|:....::|.      ..:..:|...|. 
  Fly  1264 QLRCRNVPICCDIPGYYGWRKPGV--LVEITYMIMLGSTLFLLIVMHDAKVCNLIAEKLGNCFSK 1326

  Fly  1205 --------SIRNEKIYPSYKDEDKEVDKMRRRLAYLTTAHYAFFPLILKNLSKRYGSFVAVRSLT 1261
                    ||.|:.:....:...:.::..|:.:           ||::..:||||.|.:||::::
  Fly  1327 RKRVEGGTSIENDSVVAEQRVVREMINSGRKDV-----------PLLVYKISKRYRSKLAVKAIS 1380

  Fly  1262 LDLNPFECVGLLGRNGSGKSSIFRMIVGMESITVGSIHIKGYSLKTRPKDASRHVGFCPRELMLL 1326
            ..:...||.||||.||:||:|.|:|:.|.|.||.|..:|.|.::.|.  ...|.:|:||:...|.
  Fly  1381 FHVPHAECFGLLGINGAGKTSTFKMLAGDEKITSGEAYIDGTNISTH--KVYRKIGYCPQFDALF 1443

  Fly  1327 SFMTGKDALRFCCLINGIRREYIKSLVASLAECFELVPHMNKRISTYSNGTKRKLMIAMGTLA-P 1390
            ..:||::.|...||:.|::|.::..:...||..|....||:|:...||.|.:|||..|:..|. |
  Fly  1444 EDLTGRETLNIYCLLRGVQRRHVTPICWGLAISFGFAKHMDKQTKHYSGGNRRKLSTAISVLGNP 1508

  Fly  1391 SLMCLDEPTAGVDMHAKYEIWSILDGIRQGGRSILLTTHNLEECEFLCTNVGIMDHGSLLCYGSL 1455
            |::.|||||:|:|..|:.::|.|:..||..|:||:||:|:::|||.||:.:.||..|...|.||:
  Fly  1509 SVLYLDEPTSGMDPAARRQLWQIIGLIRTAGKSIVLTSHSMDECEALCSRLAIMVDGEFKCLGSV 1573

  Fly  1456 SRLKHRFNMGIFVKVKMGTRAE-----MDDERDNWMQITMMPPNDSEMGSTVGARRMMLAHLLRH 1515
            ..||::|:.|:.:|||:..:.:     ::|...:         ||.:..|....:.:.:|.::  
  Fly  1574 QSLKNQFSKGLILKVKVKHKKKTFQRVVEDSSSS---------NDKKSISETDLKFLQMASVM-- 1627

  Fly  1516 HNPPVEPVKKSRTSRAQPDTTNSELNMRKDYEALLQELEEVFKKDHPYSTVSEKYSYRGMITFCI 1580
                    :.|:..|                   :.::.....|:.|.:.:.|:|:  |:||:.|
  Fly  1628 --------ESSQADR-------------------ILKVNRFISKEIPDAELKEEYN--GLITYYI 1663

  Fly  1581 PRGQIKWSAIFEYMENLKDEMQILYYSVSHTTFQDVFMKFVRKQN 1625
            |..: ..|.||:.:|....::.|..|.:..|..:::|:.|..|::
  Fly  1664 PHSK-TLSKIFQLLETNSHKLNIEDYLIMQTRLEEIFLDFASKRD 1707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8908NP_611464.3 rim_protein <124..1626 CDD:130324 452/1668 (27%)
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324 7/32 (22%)
rim_protein <149..1709 CDD:130324 452/1668 (27%)

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