DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8908 and abca1b

DIOPT Version :10

Sequence 1:NP_611464.3 Gene:CG8908 / 37293 FlyBaseID:FBgn0034493 Length:1626 Species:Drosophila melanogaster
Sequence 2:XP_005173137.1 Gene:abca1b / 100136868 ZFINID:ZDB-GENE-030131-9826 Length:2282 Species:Danio rerio


Alignment Length:1826 Identity:436/1826 - (23%)
Similarity:748/1826 - (40%) Gaps:440/1826 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 YVGIEFDDSFSDINELPINVTVGLRFPLHLRKNPKMVWDNTSILKHSKMDVDY------------ 176
            :.||.|.|..|:.:|||.||            |.|:..|..::.:.:|:...|            
Zfish   536 WAGIVFLDIPSNSSELPPNV------------NYKIRMDIDNVERTNKIKDGYWDPGPRADPFED 588

  Fly   177 --YQVEGFLVVQAKLSEALIRAKNEAVVLPEVILQHYPDVAEVDRLDNRVALGGV-LFLPVT--I 236
              |...||..:|..:..::|||...:.....|.:|..|....||.:..|:....: ||:.:.  .
Zfish   589 LRYIWGGFSYLQDVVEHSIIRAVTGSKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMY 653

  Fly   237 SAAYLAQMIVMERRDHLRDMLELMGVRAWIYWLSWFLVAFLLLSIPTVFMVLLLKW-RYFSLSDS 300
            |.|.:.:.:|.|:...|::.:.:||:...|.|.|||:.:.:.|.|....:|||||. .....||.
Zfish   654 SVAIIIKGVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDP 718

  Fly   301 SLVLFFLLVYNLEVLTSAFMISSFFSDT------VGVQVAIVIVHLIGCLPWRLLLMGYVPTLPR 359
            .:|..||..:.:..:...|:||:.|:..      .|:....:.:..:.|:.|:    .||....:
Zfish   719 GVVFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQ----DYVGFAAK 779

  Fly   360 TIFVCLFLNSSLAMGLQQFIKSENLRLGLHWTYLFERTDWDEFVHLGPILLFMLFGCLLRILVLA 424
            .| ..|....:...|.:.|...|...:|:.|..||.....::..:|...|:.|.|...|..::..
Zfish   780 VI-ASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMYFDAFLYGVMTW 843

  Fly   425 YMEQLRSYQ---NRKWYFPVQPSFWCRWN---------RRPRSDDFDVEGQETGIRGHPLIVRAR 477
            |:|.:...|   .|.||||...|:|...|         ::..:....:|.:.|.::   |.|...
Zfish   844 YIETVFPGQYGIPRPWYFPFTKSYWFGENSTNNTAIHGKKSNAGAVCIEEEPTHLK---LGVYIE 905

  Fly   478 NIEKVF--NEWIAVKDLNLNFYQDEITVFLGHNDSGKSTILMLLAGFLRPSAGEITINGYDLATN 540
            |:.||:  .:.:||..|.|.|::.:||.|||||.:||:|.:.:|.|...|::|...|.|.|:.:.
Zfish   906 NLVKVYRHGKKLAVDGLTLGFHEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIMGKDIRSE 970

  Fly   541 QRKARQSMCICPQPNVLFEKVNARWHLQFYCRLKGLNRQEASAETDKYLEIGRLQDFANTKVKNL 605
            ....|||:.:|||.||||..:....|:.||.|||||:.:|..||.::.|....|.....::...|
Zfish   971 LSSIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQILSDTGLPHKRKSRTSQL 1035

  Fly   606 PSGIKRMLMLCCNLCGNSKILLLDEPGTSMDPAMRSNMWDLLRRERKGRCIIMATHNMNEAEVVA 670
            ..|::|.|.:.....|.||:::||||...:||..|..:||||.:.|.||.|:::||:|:||:::.
Zfish  1036 SGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRAGRTILLSTHHMDEADILG 1100

  Fly   671 DQIVVLCDAQVIGYGTTGFLTQIAGTGSSYLLICTKMDT------C------------------- 710
            |:|.::...::...|::.||....|||  |.|...|.:|      |                   
Zfish  1101 DRIAIISHGKLCCVGSSLFLKTQLGTG--YYLTLVKKNTEPSLSSCRNSSSTVSFVKKDDNASES 1163

  Fly   711 ---------------------------IVAEVTNFLQI---RFPDIKLHNEFSIYVTYELPTKYV 745
                                       :..:||...::   ..|..::..:....:||.||.:..
Zfish  1164 SSDAGLGSDQESEAATAIGTSWPESPVVPVDVTIISRLILKHVPAARMVEDQGHEITYVLPYESA 1228

  Fly   746 QQ--YAALFLELEEALGELNLAEISVCAPTLGSVFLQMGEE--------------MRQSWNRISS 794
            :.  :..||.:|::.|.:|.::...|...||..:||::.|:              :|:.......
Zfish  1229 KNGAFVELFHDLDDRLADLGISSYGVSDTTLEEIFLKVAEDSGVDTEMLSDGTLPVRRQRRHAFG 1293

  Fly   795 FDLLSSPSPMLSLLNLLPTFEVREDDG-------------------RVKCCN----QWRAIVEKK 836
            .|..|...|    |....:|:..|.:|                   :||..:    |:.|::.|:
Zfish  1294 ADHQSCLKP----LTEDDSFDCNESEGDPESKETDYLSGSDGKGSYQVKGWSLKRQQFVALLWKR 1354

  Fly   837 RLFTLRHQK-FYCMIIATPIIICLLIISFSI---------------------FIFLVDHHLSELL 879
            .|:..|.:| |:..|:...:.:|:.:: ||:                     |:|     .||..
Zfish  1355 LLYARRSRKGFFAQIVLPAVFVCIALV-FSLIVPPFGKYPSLALNPWMYEEQFMF-----FSEDA 1413

  Fly   880 VTDLSIYPKAVFVIDSPAEGNR--------------------------------FERHYMAN--- 909
            ..|:|.:.....:.|.|..|.|                                ..|::..|   
Zfish  1414 PYDVSTHKLLRALFDDPGFGTRCMKGESIPDAPCTMGDEEWSTPEVPESIIEILTTRNWTMNDPS 1478

  Fly   910 -----------------VIGQGG------------TVRSTSGTPIDDYLL--------------- 930
                             ..|.||            |:::.:|..|.|||:               
Zfish  1479 PACECSCNGKKKMLPECPAGAGGLPPPQIKISETETLQNLTGRNISDYLVKTYAQIIGKSLKNKI 1543

  Fly   931 ----------------------AEMESDQV-KVQHTFLAGATFDSNA-----------------N 955
                                  ||...|.: :|:..|..|....|.|                 |
Zfish  1544 WVNEFRYGGFSLGARSTQVLPPAEEIDDAISRVREIFQLGKDSGSAADRFLKSLSAFINGLDTKN 1608

  Fly   956 SIIAWSNNKLKHG-----SALSMGLVYAAI--GQELAKLDIRIVNKPYQDTVQQAVRGLIYASTI 1013
            ::..|.|||..|.     :.::.|::.|.:  |::.::..|...|.|...|.:|..:..:..:::
Zfish  1609 NVKIWFNNKGWHSIGAFLNVMNNGILRANLPPGKDPSEFGITAYNHPLNLTKEQLSQVALMTTSV 1673

  Fly  1014 E--FAVLVFHYLVLGTAIFAVLPIVERRSKVQHQQFSSGMSRSTYWLSHLSWDYCFYI--AMILP 1074
            :  .::.|...:....|.|.|..|.||.:|.:|.||.||:....|||::..||.|.|:  |.::.
Zfish  1674 DVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVVPATLVI 1738

  Fly  1075 LIVVA----GITIGSVLPVI-VQLLAFGFSAISFTY----LLCLMSNDFGKMFSIILYINMIGVL 1130
            ||.|.    .....:.|||: :.||.:|:|.....|    |..:.|..:..:.|:.:.|.:.|.:
Zfish  1739 LIFVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGINGSI 1803

  Fly  1131 ALFIHPKSPQTRYA----VIESVLLVHPHYSLCCGMYEAIRMSTFS------------------- 1172
            :.|:..........    ::::|||:.||:.|..|:.:.::....:                   
Zfish  1804 STFVMELFGNHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLEWDM 1868

  Fly  1173 -LKQLPYLIFSGAAYLTIVVFAWVPRRLNYVFKSIRNEKIYPSYKDEDKEVDKMRRRLAYLTTAH 1236
             .|.|..:...|..:..|.|.  :..|..:..||: ..|:.| ..:||::|.:.|:|:  ::.|.
Zfish  1869 VGKNLFAMAVEGVVFFIITVL--IQYRFFFEPKSL-CPKLSP-IGEEDEDVARERQRI--MSGAG 1927

  Fly  1237 YAFFPLILKNLSKRY--GSFVAVRSLTLDLNPFECVGLLGRNGSGKSSIFRMIVGMESITVGSIH 1299
            .... |.|:.|:|.|  ....||..|.:.:.|.||.||||.||:||:|.|:|:.|...:|.|...
Zfish  1928 QGDI-LELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTKGEAF 1991

  Fly  1300 IKGYSLKTRPKDASRHVGFCPRELMLLSFMTGKDALRFCCLINGIRREYIKSLVASLAEC----F 1360
            |.|.|:.....:..:::|:||:...:...:||::.|.|..::.|:.    ::.|.::||.    .
Zfish  1992 IAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVP----ENEVCAVAEWGIRKL 2052

  Fly  1361 ELVPHMNKRISTYSNGTKRKLMIAMGTL-APSLMCLDEPTAGVDMHAKYEIWSILDGIRQGGRSI 1424
            .||.:::|...:||.|..|||..|:..: ||.::.|||||.|:|..|:..:|:.:..:.:.|||:
Zfish  2053 GLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSV 2117

  Fly  1425 LLTTHNLEECEFLCTNVGIMDHGSLLCYGSLSRLKHRFNMGIFVKVKMGTRAEMDDERDNWMQIT 1489
            :||:|::||||.|||.:.||.:|...|.||:..||:||..|..:                     
Zfish  2118 VLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTI--------------------- 2161

  Fly  1490 MMPPNDSEMGSTVGARRMMLAHLLRHHNPPVEPVKKSRTSRAQPDTTNSELNMRKDYEALLQELE 1554
                                  :||...|             .||               ||.:.
Zfish  2162 ----------------------ILRVAGP-------------DPD---------------LQPVM 2176

  Fly  1555 EVFKKDHPYSTVSEKYSYRGMITFCIPRGQIKWSAIFEYMENLKDEMQILYYSVSHTTFQDVFMK 1619
            :..:.:.|.||:.||  :|.|:.:.:|......:.||..:...|:.::|..||||.||...||:.
Zfish  2177 KFIESELPGSTLKEK--HRNMLQYQLPSSLTSLAHIFSILAKNKEFLRIEDYSVSQTTLDQVFVN 2239

  Fly  1620 FVRKQN 1625
            |.:.|:
Zfish  2240 FAKDQS 2245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8908NP_611464.3 rim_protein <124..1626 CDD:130324 436/1826 (24%)
abca1bXP_005173137.1 rim_protein 1..2242 CDD:130324 435/1821 (24%)

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