DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8908 and abca2

DIOPT Version :10

Sequence 1:NP_611464.3 Gene:CG8908 / 37293 FlyBaseID:FBgn0034493 Length:1626 Species:Drosophila melanogaster
Sequence 2:XP_005165287.2 Gene:abca2 / 100006090 ZFINID:ZDB-GENE-050517-1 Length:2503 Species:Danio rerio


Alignment Length:2033 Identity:444/2033 - (21%)
Similarity:765/2033 - (37%) Gaps:579/2033 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 VNITTKVPYIYYSPENLVLAAVIEDVVHDLKAVGS---------------KAFASASELNKALIG 118
            |::.|..|.|.|||.:..:..||:........||:               :||....:|...|:.
Zfish   503 VHLMTTNPKILYSPIDSEVDKVIQKANETFAFVGNVTHYARVWLNISAELRAFLEEGKLQNHLMW 567

  Fly   119 --------KDTYGYVGIEFDDSFSDINE----LPINVTVGLRFPLHLRKNPKMVWDNTSILKHSK 171
                    |..:..:.:...:..:.:.|    || |.|..|. .||...|....|.|..    ||
Zfish   568 LQQFITDLKRHHELLNVSDSELMNSLLEENFTLP-NTTTLLE-QLHTIDNAACGWTNFM----SK 626

  Fly   172 MDVD------------------------------------------------------------- 175
            :.||                                                             
Zfish   627 VSVDIFRGFPDEESIVNYTLNQAYHDNVSVFASVIFQTNKDGSLPPHVMYKIRQNSSFTEKTNEI 691

  Fly   176 --------------YYQVEGFLVVQAKLSEALIRA-KNEAVVLPEVILQHYPDVAEVDRLDNRVA 225
                          :|.:.||:.:|..:..|:|.. ....||.|...:|.:|... ..|.|....
Zfish   692 RRAYWRPGPNTGGKFYFLYGFVWIQDMIERAIINTFVGHDVVEPGNYVQMFPYPC-YTRDDFLFV 755

  Fly   226 LGGVLFLPVTISAAY----LAQMIVMERRDHLRDMLELMGVRAWIYWLSWFLVAFLLLSIPTVFM 286
            :..::.|.:.||..|    :.|.||.|:...|::::::||:...::|::||:..|:.|||....:
Zfish   756 IEHMMPLCMVISWVYSVAMMIQHIVAEKEQRLKEVMKMMGLNNAVHWVAWFITGFVQLSISVTAL 820

  Fly   287 VLLLKWRYFSL-SDSSLVLFFLLVYNLEVLTSAFMISSFFSDTVGVQVAIVIVHLIGCLPWRLLL 350
            ..:||:....| ||..::..||.:|.:..:...|::|..:|..........|::.:..:|:.   
Zfish   821 TAILKYGKVLLHSDPFIIWLFLTIYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYM--- 882

  Fly   351 MGYVP----------TLPRTIFVCLFLNSSLAMGLQQFIKSENLRLGLHWTYLFER-TDWDEFVH 404
              ||.          |........|...::..:|.:.|...|...:|:.|..:.:. .:.|:|..
Zfish   883 --YVAIREEVAHDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWRTINQSPVEGDDFNL 945

  Fly   405 LGPILLFMLFGCLLRILVLAYMEQLRSYQ---NRKWYFPVQPSFW-------------------- 446
            |..:::..:...:..:|.. |:|.:....   .|.||||:|.|:|                    
Zfish   946 LLSMVMLTIDAIVYGVLTW-YIEAVHPGMYGLPRPWYFPLQKSYWLGSGRIETWEWPWGGGTRLS 1009

  Fly   447 -------CRWNRRPRSDDFDVEGQETGIRGHPLIVRARNIEKVF--NEWIAVKDLNLNFYQDEIT 502
                   |....|...:...:|.:...:   ||:|....:.||:  ...:|:..|:||.:::::.
Zfish  1010 VMEEDQACAMEHRRSEETRGIEEEPNHL---PLVVCIDKLTKVYKTGSKLALNKLSLNLHENQVV 1071

  Fly   503 VFLGHNDSGKSTILMLLAGFLRPSAGEITINGYDLATNQRKARQSMCICPQPNVLFEKVNARWHL 567
            .|||||.:||:|.:.:|.|...|::|..||.|:|:.|...:.||::.:|||.||||:|::...||
Zfish  1072 SFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMERIRQNLGMCPQHNVLFDKLSVEEHL 1136

  Fly   568 QFYCRLKGLNRQEASAETDKYLEIGRLQDFANTKVKNLPSGIKRMLMLCCNLCGNSKILLLDEPG 632
            .||.||||:..::...|.||.:|...|.:..::.|:.|..|:||.|.:.....|.|:.::||||.
Zfish  1137 WFYSRLKGMAEEDIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAVILDEPT 1201

  Fly   633 TSMDPAMRSNMWDLLRRERKGRCIIMATHNMNEAEVVADQIVVLCDAQVIGYGTTGFLTQIAGTG 697
            ..:||..|..:|||:.:.::||.|:::||:|:||:::.|:|.::...::...|:..||....|.|
Zfish  1202 AGVDPYARRAIWDLILKYKQGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKSTYGDG 1266

  Fly   698 SSYLLICTKMDT----------------CIVAEVTNFLQIRFPDIKLHNEFSIYVTYELPTKYVQ 746
            ....|:..:.|:                |....||.|::.......|.::.:..::|.||::.|:
Zfish  1267 YKLTLVKKQSDSHTADQSSQSPSSSISPCSENRVTQFIRQYVASCLLVSDSNTELSYVLPSEAVK 1331

  Fly   747 Q--YAALFLELEEALGELNLAEISVCAPTLGSVFLQMGEEMRQSWNRISSFDLLSSPS------- 802
            :  :..||..||::|..|.|....|...||..|||::.||.....|  |..|:..||.       
Zfish  1332 KGCFERLFQALEQSLDSLALTSFGVMDTTLEEVFLKVSEEDLSLEN--SDADMKDSPGGASAGKP 1394

  Fly   803 -------------------PMLSLLNLL------------------------------------- 811
                               |.:.|.||:                                     
Zfish  1395 SGLLGGPQCEGAPAAAVMRPEVELSNLMMCSRLSPSQASLQSGSSLGSVRGDEGGPYSEFYGDYC 1459

  Fly   812 PTFE--------------------VREDDGRVKCCNQWRAIVEKKRLFTLRHQKFYC-------- 848
            |.|:                    |.|..|..|....|   ::.::...|..::|:|        
Zfish  1460 PLFDNGQDLDSASLRDEESSPQPTVLEGQGSFKLDGWW---LKLRQFHGLIVKRFHCAKRNTKGI 1521

  Fly   849 --MIIATPIIICL-LIISFSI-------------------------FIFLVDHHLSEL------- 878
              .|:.....:|: :.::.|:                         ||...:...|:.       
Zfish  1522 FSQILLPAFFVCVAMTVALSVPEIGDLPPLILSPSQYHNYTQPRGNFIPYANEDRSQYRTKFSPD 1586

  Fly   879 --------------------------------LVTDLSIY------------------------P 887
                                            |...|:.|                        |
Zfish  1587 AGPQRIVNTLRLPSGVGATCILKTPFNSTLDQLAQTLNPYANNSKTLAARYFDSMCLDSFTQGVP 1651

  Fly   888 KAVFV--IDSPAEGNRFERHY---MANVIGQGGTVRSTSGTP----------------------- 924
            .:.||  ..|||..:..|.|:   :.|......|||..:.:|                       
Zfish  1652 LSNFVPPPPSPAPSDDPEAHFEDGLWNYTAAPTTVREMATSPPTLPLSIHEPVRCICSMQGTGFS 1716

  Fly   925 ---------------------------IDDYLLAEMESDQVKVQHTFLAGATFDSNANSIIA--- 959
                                       :.:|||  ..||:::: |.: .|.|..:...|:.|   
Zfish  1717 CPSGVGGRPPLMKVVTGDILVDITGRNVSEYLL--YTSDRLRL-HRY-GGFTVGNIQKSVPASFG 1777

  Fly   960 ------------------WSNNKLKHGSALSMGLVYAAI---------GQELAKLDIRIVNKPYQ 997
                              ..|||..|.....:.::..||         |...| ..|.:.|.|..
Zfish  1778 RKTPPMVRKIAVRRSSQVLYNNKGYHSMPTYLNVLNNAILRANLPSSKGNPSA-YGITVTNHPMN 1841

  Fly   998 DT-VQQAVRGLIYASTIEFAVLVFHYLVLGTAIFAVLPIVERRSKVQHQQFSSGMSRSTYWLSHL 1061
            .| ...::..|:..:.:..|:.:...:....|.|.|..:.|:.:|.:|.||.||....||||::.
Zfish  1842 RTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCDPVTYWLANY 1906

  Fly  1062 SWDYCFYI------AMILPLIVVAGITIGSVLPVIVQL-LAFGFSAISFTYLLCLMSNDFGKMFS 1119
            .||...|:      .:||.:..:...|..:..|.::.| |.:|:|.....|............:.
Zfish  1907 IWDMLNYLVPATCCVLILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSTAYV 1971

  Fly  1120 IILYINM-IGV--------LALFIHPKSPQTRYAVIESVLLVHPHYSLCCGMYEA---------- 1165
            .::.||: ||:        |.||...|..:...:.::|..|:.|:|:|..|:.|.          
Zfish  1972 FLIVINLFIGITATVATFLLQLFERDKDLKLVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYY 2036

  Fly  1166 IRMSTFSLKQLPY---LIFSGAAYLTIVVFA----WVPRRLNYVFKSIRNEKIYPSYKDEDKEVD 1223
            .::..|...:.|:   ::..|...:||..|.    .:..:.|::.|:.|........:|:|.:|.
Zfish  2037 AKIGQFDKVKSPFEWDIVTRGLVAMTIEGFVGFLITILCQYNFLRKAQRVPVNSQPVEDDDVDVA 2101

  Fly  1224 KMRRRLAYLTTAHYAFFPLILKNLSKRY-----GSFVAVRSLTLDLNPFECVGLLGRNGSGKSSI 1283
            ..|||:......:..   |.:.||:|.|     |..:||..|.|.:.|.||.||||.||:||::.
Zfish  2102 CERRRVLRGDADNDM---LKIDNLTKVYKSRKMGRILAVDRLCLGVRPGECFGLLGVNGAGKTTT 2163

  Fly  1284 FRMIVGMESITVGSIHIKGYSLKTRPKDASRHVGFCPRELMLLSFMTGKDALRFCCLINGIRREY 1348
            |:|:.|.||.|.|...|:.:|:........:.:|:||:...|...:|.::.|.....:.||..:.
Zfish  2164 FKMLTGDESTTGGEAFIQEHSILRELLRVQQSIGYCPQFDALFDDLTAREHLELYTRLRGIPWKD 2228

  Fly  1349 IKSLVASLAECFELVPHMNKRISTYSNGTKRKLMIAMGTLA-PSLMCLDEPTAGVDMHAKYEIWS 1412
            .:.:|....|..||..:.:|...|||.|.||||..|:..:. |||:.|||||.|:|..|:..:|:
Zfish  2229 EERVVQWALEKLELSKYADKPAGTYSGGNKRKLSTAIALIGYPSLIFLDEPTTGMDPKARRFLWN 2293

  Fly  1413 ILDGIRQGGRSILLTTHNLEECEFLCTNVGIMDHGSLLCYGSLSRLKHRFNMGIFVKVKMGTRAE 1477
            ::..|.:.|||::||:|::||||.|||.:|||.:|...|.||:..||:||..|..:.|:..|.|.
Zfish  2294 LILDIIKTGRSVVLTSHSMEECEALCTRLGIMVNGRFKCLGSIQHLKNRFGDGYMITVRTKTTAS 2358

  Fly  1478 MDDERDNWMQITMMPPNDSEMGSTVGARRMMLAHLLRHHNPPVEPVKKSRTSRAQPDTTNSELNM 1542
                                                                             
Zfish  2359 ----------------------------------------------------------------- 2358

  Fly  1543 RKDYEALLQELEEVFKKDHPYSTVSEKYSYRGMITFCIPRGQIKWSAIFEYMENLKDEMQILYYS 1607
                   ::|:...|.::.|.:.:.|::..:  |.:.:....|..:.:|..||.:.:.:.|..||
Zfish  2359 -------VKEVIRFFNRNFPEAILKERHHTK--IQYQLKSENISLAQVFSKMEQVVEVLSIEDYS 2414

  Fly  1608 VSHTTFQDVFMKFVRKQN 1625
            ||.||..:||:.|.:||:
Zfish  2415 VSQTTLDNVFVNFAKKQS 2432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8908NP_611464.3 rim_protein <124..1626 CDD:130324 428/1955 (22%)
abca2XP_005165287.2 None

Return to query results.
Submit another query.