DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCNA and Pcna

DIOPT Version :9

Sequence 1:NP_476905.1 Gene:PCNA / 37290 FlyBaseID:FBgn0005655 Length:260 Species:Drosophila melanogaster
Sequence 2:NP_071776.1 Gene:Pcna / 25737 RGDID:3269 Length:261 Species:Rattus norvegicus


Alignment Length:259 Identity:183/259 - (70%)
Similarity:221/259 - (85%) Gaps:0/259 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRN 65
            ||||||.|.:||||:|:|:|||:|||.:|.|..|:.||:||:||||||.|||||:|||.:|||||
  Rat     1 MFEARLIQGSILKKVLEALKDLINEACWDISSGGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRN 65

  Fly    66 LSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMNLDQEHLGIPE 130
            |:||:||.||:||||||.|||.:|::|:|||||:.::||:.|||||||||||||:||.|.|||||
  Rat    66 LAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPE 130

  Fly   131 TDFSCVVRMPAMEFARICRDLAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAV 195
            .::||||:||:.|||||||||:...::|||.|.|:||||||||::|..||||:||.:||||||||
  Rat   131 QEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAV 195

  Fly   196 IIEMQEPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYYLAPKIEDNE 259
            .|||.|||.||||.||||.||||||||..|.|||.|||||||||.|.|:||::|||||||||.|
  Rat   196 SIEMNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCNANP_476905.1 pcna 1..259 CDD:273158 182/257 (71%)
PcnaNP_071776.1 pcna 1..259 CDD:273158 182/257 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353156
Domainoid 1 1.000 190 1.000 Domainoid score I3182
eggNOG 1 0.900 - - E1_COG0592
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1945
Inparanoid 1 1.050 376 1.000 Inparanoid score I2023
OMA 1 1.010 - - QHG62193
OrthoDB 1 1.010 - - D1012066at2759
OrthoFinder 1 1.000 - - FOG0003572
OrthoInspector 1 1.000 - - oto96343
orthoMCL 1 0.900 - - OOG6_100882
Panther 1 1.100 - - LDO PTHR11352
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2443
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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