DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCNA and pcn1

DIOPT Version :9

Sequence 1:NP_476905.1 Gene:PCNA / 37290 FlyBaseID:FBgn0005655 Length:260 Species:Drosophila melanogaster
Sequence 2:NP_596504.1 Gene:pcn1 / 2540020 PomBaseID:SPBC16D10.09 Length:260 Species:Schizosaccharomyces pombe


Alignment Length:261 Identity:137/261 - (52%)
Similarity:199/261 - (76%) Gaps:3/261 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRN 65
            |.|||..||.:|||:|||||:|:.:|.|||:|:||.|||||:|||:|||:.::||||:.:|||||
pombe     1 MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPYRCDRN 65

  Fly    66 LSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMNLDQEHLGIPE 130
            :::|:||.:::|:|:||.|||.||:||:|..:.:.::|||...:::|||::|||::||||||||:
pombe    66 IALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPD 130

  Fly   131 TDFSCVVRMPAMEFARICRDLAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAV 195
            .::...:.|||.||.||.|||...|:||.|..:||||:||..||:|..:..|.|...:..:::::
pombe   131 IEYDATITMPAAEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSI 195

  Fly   196 IIEMQEPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYYLAPKI--EDN 258
            .|.:.:.|||||:.:||..|||||||:|:|.|||..||||:|||.::. |.:|:||||||  ||.
pombe   196 EISLTQAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLVEYKMES-GFLRFYLAPKIGEEDE 259

  Fly   259 E 259
            |
pombe   260 E 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCNANP_476905.1 pcna 1..259 CDD:273158 136/259 (53%)
pcn1NP_596504.1 pcna 1..258 CDD:273158 134/257 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 162 1.000 Domainoid score I965
eggNOG 1 0.900 - - E1_COG0592
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1945
Inparanoid 1 1.050 291 1.000 Inparanoid score I633
OMA 1 1.010 - - QHG62193
OrthoFinder 1 1.000 - - FOG0003572
OrthoInspector 1 1.000 - - otm47141
orthoMCL 1 0.900 - - OOG6_100882
Panther 1 1.100 - - LDO PTHR11352
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2713
SonicParanoid 1 1.000 - - X2443
TreeFam 1 0.960 - -
1413.860

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