DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hacl and PDC1

DIOPT Version :9

Sequence 1:NP_611460.1 Gene:Hacl / 37285 FlyBaseID:FBgn0034488 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_013145.1 Gene:PDC1 / 850733 SGDID:S000004034 Length:563 Species:Saccharomyces cerevisiae


Alignment Length:561 Identity:125/561 - (22%)
Similarity:222/561 - (39%) Gaps:95/561 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAEVEAVQIIAESLKQQGVEYVFGIIG-IPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGYLT 64
            |:|:...:.:.|.|||..|..|||:.| ..:..|...::..|:::.|..||..|.|||.  ||..
Yeast     1 MSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--GYAR 63

  Fly    65 GKPGVCLVVS-GPGLLHVTGGMANAQVNCWPLIVIGGATNQD--------HEGIGGFQECPQVEL 120
            .|...|::.: |.|.|....|:|.:......::.:.|..:..        |..:|.........:
Yeast    64 IKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRM 128

  Fly   121 SRPYCKYAARPATAALIPLHVEKAVRYATYGRPGVAYLDFPGNILQSKAQEASIYKALAHPAPPL 185
            |....:..|.....|..|..:::.:| .||......||..|.|::.           |..||..|
Yeast   129 SANISETTAMITDIATAPAEIDRCIR-TTYVTQRPVYLGLPANLVD-----------LNVPAKLL 181

  Fly   186 AYP------PHD--------DVIRAAKLLRQAKRPLVIVGKGSAYAHAENTLRHFIENTNLPFLP 236
            ..|      |:|        |.|.|  |::.||.|:::.....:....:...:..|:.|..|...
Yeast   182 QTPIDMSLKPNDAESEKEVIDTILA--LVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFV 244

  Fly   237 TPMGKGVVSDTAPQ-------CVSSARTL-ALQKADVVLLLGARLNWILHFGKAPRYDKDVKFIQ 293
            ||||||.:.:..|:       .:|..... |::.||::|.:||.|: ..:.|......|....::
Yeast   245 TPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLS-DFNTGSFSYSYKTKNIVE 308

  Fly   294 VDINPEELHNSVVASVAIQADIRPFAEQLFEQMNAVNFRFGYEQDWWKQLAVKCKQNRDTVQKMS 358
            ...:..::.|:....|.::..::.....:.:...      ||     |.:||..:    |....:
Yeast   309 FHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAK------GY-----KPVAVPAR----TPANAA 358

  Fly   359 LNTETPLNYYAVFHHLRELLPKDTIIVSE-GANTMDIGRSMLLNEQPRHRLDAGTFGTMGVGPGF 422
            :...|||....:::.|...|.:..::::| |.:...|.::...|.  .:.:....:|::|...|.
Yeast   359 VPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNN--TYGISQVLWGSIGFTTGA 421

  Fly   423 AVAAALFCRDFAPGKRVLCVEGDSAFGFSGMEIETMVRYKLPVTIVIVNNNGIYGGFDKDTFEAI 487
            .:.||....:..|.|||:...||.:...:..||.||:|:.|...:.::||:|.       |.|.:
Yeast   422 TLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGY-------TIEKL 479

  Fly   488 RSEGDLTQITPPSALGVQVRYEE--------MMKMFGMKGY 520
                    |..|.|     :|.|        ::..||.|.|
Yeast   480 --------IHGPKA-----QYNEIQGWDHLSLLPTFGAKDY 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HaclNP_611460.1 PRK09259 8..552 CDD:236433 123/554 (22%)
TPP_PYR_POX_like 8..161 CDD:132918 39/162 (24%)
TPP_enzyme_M 195..322 CDD:278628 27/134 (20%)
TPP_BZL_OCoD_HPCL 367..550 CDD:238962 37/163 (23%)
PDC1NP_013145.1 PDC1 1..563 CDD:226470 125/561 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S956
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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