DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11044 and lrrc29

DIOPT Version :9

Sequence 1:NP_611456.1 Gene:CG11044 / 37281 FlyBaseID:FBgn0034484 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_001339819.4 Gene:lrrc29 / 799466 ZFINID:ZDB-GENE-030131-7165 Length:644 Species:Danio rerio


Alignment Length:557 Identity:124/557 - (22%)
Similarity:198/557 - (35%) Gaps:185/557 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 YLPDLVLEQIFTYLTPKERYYAGLVCRQWYRAFYLPTVWNNFLVDDRTLTKPKFNYYSGWQFCLD 117
            :||..::..||::|...:|..|.|||:.||.|       :......|.||. ||...|       
Zfish     5 HLPSEIITYIFSFLHVMDRKEASLVCKSWYNA-------SQDYPFKRNLTF-KFPASS------- 54

  Fly   118 HMRTQFCLSRIGRYVRGIEFRP------WHSFNNIFQFMTMLTWNIDKGREVNPDTQFIGI-GSR 175
                    |.:| ::||:...|      .|...:......:|    :.|..:.|....:.: ||.
Zfish    55 --------SSLG-FIRGLARHPRCGLVISHLDGSSVSRQVLL----EVGLHLGPRLDSLALPGSS 106

  Fly   176 I--RTLVYHFPCNMS-QPNDPEGI-KLFGTGGQLLR------VLKELL----LRLTDLHTLKLVD 226
            |  ..|:...|...| :..|.:|: .||.:|..|.|      |.:.||    |.|::|..|..:.
Zfish   107 ITESCLLELLPRLTSLRKLDLQGLDSLFMSGAFLSREEHRRKVYRALLNLEELNLSNLRYLSDLS 171

  Fly   227 FVLERYEANHLLDEVVCSCCTK-MRVLNLVNVTTMH----------CPIMHVGLFLNLQVLTISP 280
            |       |.|      :.||. :|.|:|   :..|          ||:......|      :|.
Zfish   172 F-------NRL------TICTPGLRRLSL---SGCHISFEFDPYRGCPVGSGSSAL------VSL 214

  Fly   281 QNIDDDVLSLL--ADTKLRHLHLLQNCYTPSHLTISACGVKAWRNVKKTNPRLRVHLRLE----- 338
            :|:    |:||  ..:.||.|.|.:...||          |:.|::.|    || .||||     
Zfish   215 RNL----LNLLQKQTSTLRSLDLSRTGITP----------KSLRSISK----LR-GLRLEELNLH 260

  Fly   339 ---NLTDG--EVVLQPEAPVHSITY-------CAPQTRIRAELL--------------------V 371
               .|||.  |::.:.::.:..:..       |.....:.|||.                    :
Zfish   261 GCKELTDYSIEILCKYQSGLRMLDLSGCMELSCRAVLAVGAELKELRVLSFSQDWKITDKGLAEL 325

  Fly   372 RMVDHYKS-----TLAVYGHELLPRFSSPKPFHSRIDSLMLLMCRQCFNVDTLIIREKVSTSTLL 431
            .|:.|.:|     .|.|.|.||:...|.|:| .:::::|.|..|        ..||:.|..|...
Zfish   326 MMLPHLRSLDLSECLHVSGTELVKGLSGPEP-RAQVETLSLRNC--------TYIRDSVVFSLAQ 381

  Fly   432 LIAKTAKNLQ--------HLHVRRFAVILRCDWPRHPEWSNEFYAW----LKRNSRSYEAVEREI 484
            |:....:.|.        .|.||..|..|.........|..|...|    :...::..:..:||.
Zfish   382 LLGVHLRELDLSSCVYLTDLSVRAIATFLPALLVLRLGWCKEISDWGLLGMTEPTKHCQPSDREE 446

  Fly   485 SQ---------ILGY----------KWRLLSDRDFKQ 502
            .:         .:|:          |.||::|.|.::
Zfish   447 DKGPSFTRTFGNMGFFQPPSLPFQDKPRLVTDEDLEE 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11044NP_611456.1 F-box-like 51..94 CDD:289689 13/40 (33%)
lrrc29XP_001339819.4 F-box-like 4..49 CDD:289689 16/51 (31%)
leucine-rich repeat 71..96 CDD:275381 3/28 (11%)
leucine-rich repeat 97..121 CDD:275381 5/23 (22%)
leucine-rich repeat 122..179 CDD:275381 17/69 (25%)
leucine-rich repeat 182..227 CDD:275381 12/57 (21%)
AMN1 215..427 CDD:187754 54/239 (23%)
leucine-rich repeat 228..253 CDD:275381 11/39 (28%)
leucine-rich repeat 254..277 CDD:275381 6/22 (27%)
leucine-rich repeat 280..305 CDD:275381 4/24 (17%)
leucine-rich repeat 306..325 CDD:275381 0/18 (0%)
leucine-rich repeat 331..359 CDD:275381 9/28 (32%)
leucine-rich repeat 360..386 CDD:275381 8/33 (24%)
leucine-rich repeat 387..412 CDD:275381 6/24 (25%)
leucine-rich repeat 413..497 CDD:275381 11/71 (15%)
AMN1 <498..613 CDD:187754
leucine-rich repeat 498..522 CDD:275381
leucine-rich repeat 523..548 CDD:275381
leucine-rich repeat 549..574 CDD:275381
leucine-rich repeat 575..598 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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