DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11044 and kdm2ab

DIOPT Version :9

Sequence 1:NP_611456.1 Gene:CG11044 / 37281 FlyBaseID:FBgn0034484 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_001339797.3 Gene:kdm2ab / 799441 ZFINID:ZDB-GENE-101007-5 Length:1263 Species:Danio rerio


Alignment Length:305 Identity:62/305 - (20%)
Similarity:98/305 - (32%) Gaps:124/305 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 IFTYLTPKERYYAGLVCRQWYRAFYLPTVWNNFLVDDRTLTKPKFNYYSGWQFCLDHMRTQFCLS 126
            :|.|||..|......||:.||:       |.                      |...:.|:..||
Zfish  1007 VFRYLTRAELCVCMAVCKSWYK-------WG----------------------CDKRLWTRISLS 1042

  Fly   127 R----IGRYVRGIEFRPWHSFNNIFQFMTM-LTW-NIDKGREVNPDTQFIGIGSRIRTLVYHFP- 184
            |    ..:.:.||..|         |.:|: |:| ||.|              .::..|:...| 
Zfish  1043 RSRSMSPQVLTGIIKR---------QPVTLDLSWANITK--------------KQLSWLINRLPG 1084

  Fly   185 --------CN------MSQPNDPEGIKLFGTGGQLLRVLKELLLRLTDLHTLKLVDFVLERYEAN 235
                    ||      :|.|:.|                   |||..|   |...|.:.:. :..
Zfish  1085 LKDLVLSGCNWSSVSALSSPSCP-------------------LLRSLD---LSWADGIKDA-QIR 1126

  Fly   236 HLLDEVVCSCCTKMRVLNL-------VNVTTMHCPIMHVGLFLNLQVLTISPQNIDDDVLSLLA- 292
            .||:.......::|:.:..       |...|:...|.|:.|...|:   :|...|.|..|:||: 
Zfish  1127 ELLNPPGSDNRSQMKNMQCLWLCGLEVTEATLRLIIRHMPLLTRLE---LSRCPITDGALNLLSA 1188

  Fly   293 -DTKLRHLHLLQNCYTPSHLTISACGVKAWRNVKKTNPRLRVHLR 336
             .:..|:        |.:||.::.|        .:...|..|:||
Zfish  1189 VGSSTRN--------TLTHLNLAGC--------TQLTDRCLVYLR 1217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11044NP_611456.1 F-box-like 51..94 CDD:289689 10/31 (32%)
kdm2abXP_001339797.3 JmjC 150..221 CDD:214721
cupin_like 197..297 CDD:304367
zf-CXXC <524..558 CDD:251032
PHD_4 563..624 CDD:293471
F-box-like 1002..1042 CDD:289689 12/63 (19%)
leucine-rich repeat 1036..1060 CDD:275381 7/32 (22%)
leucine-rich repeat 1061..1084 CDD:275381 7/36 (19%)
AMN1 1075..1230 CDD:187754 37/185 (20%)
leucine-rich repeat 1085..1108 CDD:275381 5/41 (12%)
leucine-rich repeat 1109..1142 CDD:275381 8/36 (22%)
leucine-rich repeat 1143..1167 CDD:275381 4/23 (17%)
leucine-rich repeat 1197..1216 CDD:275381 5/26 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.