DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and AT1G56540

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_176047.1 Gene:AT1G56540 / 842107 AraportID:AT1G56540 Length:1096 Species:Arabidopsis thaliana


Alignment Length:876 Identity:190/876 - (21%)
Similarity:311/876 - (35%) Gaps:264/876 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 RLDLQCSQELLHAS------ELAPGLFRQLQKLSE-LRIDACKL-------QRVPPN----AFEG 112
            |....|..:.||.|      |....|..|.|.||: |.:|..::       :|:...    ..:.
plant   236 RFQHNCFMDNLHESYKIGLVEYGLRLRLQEQLLSKILNLDGIRIAHLGVIRERLHDQKVLIILDD 300

  Fly   113 LMSLKRLTLESHNAVWGPGKTLELHGQSFQGLKELSELHLGDNNIRQLPEGVWCSMPSLQLLNLT 177
            :.||.:|...::...:|||..:.:..::    ||:.:.| |.::|..:  |...|..:|.:..|:
plant   301 VESLDQLDALANIEWFGPGSRVIVTTEN----KEILQQH-GISDIYHV--GFPSSKEALMIFCLS 358

  Fly   178 QNRIRSA--EFLGFS---EKLCA---------GSALSNANGA--VSGGSELQT-LDVSFNELRSL 225
            ..|..|.  .|:..:   .|||.         ||:|...|.:  :.....||| ||   ..:.|:
plant   359 AFRQLSPPDRFMNLAAEVAKLCGYLPLALHVLGSSLRGKNYSDWIEELPRLQTCLD---GRIESV 420

  Fly   226 PDAWGASRLRRLQTLSL--------QHNN--ISTLAPNALAGLSSLRVLNISYNHLVSLPSEAFA 280
            ......|...:.|.|.|        ||.:  .|.||...|.....|::|  :..||:.:...|  
plant   421 LKVGYESLHEKDQALFLYIAVFFNYQHADYVTSMLAKTNLNVRLGLKIL--ANRHLIHIGHGA-- 481

  Fly   281 GNKELRELHLQGNDLYELPKGL--LHRL----------------EQLLVLDLSGNQLTSHHVDNS 327
                               ||:  :|||                .|:||    ..|..|:.::|:
plant   482 -------------------KGIVVMHRLLKVMARQVISKQEPWKRQILV----DTQEISYVLENA 523

  Fly   328 TFAGLIRLIVLNLSN-NALTRIGSKTFKELY---FLQILDMRNNSIGHI---EEGAFLPLY---- 381
            ...|.|..|..::.. |.|| |.:|.|:.::   .|::.|......|.:   ||..|||..    
plant   524 EGNGSIAGISFDVGEINKLT-ISAKAFERMHNLLLLKVYDPWFTGKGQVHIPEEMDFLPRLSLLR 587

  Fly   382 ----------------NLHTLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFR---- 426
                            ||..||:.:::|    .:::.|    |:|..|...:.:..|...:    
plant   588 WDAYTRKTLPRRFCPENLVELNMPDSQL----EKLWEG----TQLLANLKTMKLSRSSRLKELPN 644

  Fly   427 --NCSDLKELDL-SSNQLTEVPEAVQDLSMLKTLDLGENQISEFKNNTFRNLN---QLTGLRLID 485
              |..:|:.||| ....|.|:|.::.:|..|..|:          .|..|.|.   .||.|..::
plant   645 LSNAKNLERLDLHECVALLELPSSISNLHKLYFLE----------TNHCRRLQVIPTLTNLVSLE 699

  Fly   486 N--RIGNITVGMFQDLP----RLSVLN-------LAKNRIQSIERGAFDKN-------------T 524
            :  .:|.:.:..|.|:|    ||||:.       .:......||  :||.:             |
plant   700 DIKMMGCLRLKSFPDIPANIIRLSVMETTIAEFPASLRHFSHIE--SFDISGSVNLKTFSTLLPT 762

  Fly   525 EIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIEAL----- 584
            .:..:.:|.:.:..|......|.:|..|.|| |.........:||:||||  ..::.|:|     
plant   763 SVTELHIDNSGIESITDCIKGLHNLRVLALS-NCKKLTSLPKLPSSLKWL--RASHCESLERVSE 824

  Fly   585 -----------GNYYKLQEEIRVT----------------TLDASHNRITEIGAMSVPNSIE--- 619
                       .|.:||..:.|..                .:.|..:......::::|||..   
plant   825 PLNTPNADLDFSNCFKLDRQARQAIFQQRFVDGRALLPGRKVPALFDHRARGNSLTIPNSASYKV 889

  Fly   620 LLFINNNIIGQIQANTFVDKTRLARVDLYANVLS------------KISLNAL----RVAPVSAE 668
            .:.|:.....:.:.:|.|.:. |.|..:.:|.::            |..:..|    .|.|||..
plant   890 CVVISTEFDHKDRDSTIVSRL-LCRCIVISNSVNSTDKEFVLTDVYKYRMEHLFIFHMVNPVSFF 953

  Fly   669 KP-----VPEFYLGGNPFE-CDCSMEWL----QRINNLTTRQHPHVVDLGNIECLMPHSRSAPLR 723
            .|     |.||......|: .:|.::.|    :|.||:.:....   ||..|     |..|..||
plant   954 YPSSREIVLEFSSIHKHFDIVECGVQILTDETERNNNVGSADED---DLWYI-----HEFSESLR 1010

  Fly   724 PLASLSASDFVCKYESHCPPTCHCCEYEQCE 754
              ......|.|.|.||     |...|.|..|
plant  1011 --KEEKDKDSVAKSES-----CGASEKEDEE 1034

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 8/30 (27%)
leucine-rich repeat 92..115 CDD:275380 5/34 (15%)
LRR_8 115..181 CDD:404697 15/65 (23%)
leucine-rich repeat 116..146 CDD:275380 5/29 (17%)
leucine-rich repeat 147..170 CDD:275380 5/22 (23%)
leucine-rich repeat 171..201 CDD:275380 11/43 (26%)
LRR 210..592 CDD:443914 108/489 (22%)
leucine-rich repeat 212..236 CDD:275380 7/24 (29%)
leucine-rich repeat 237..260 CDD:275380 9/32 (28%)
leucine-rich repeat 261..284 CDD:275380 5/22 (23%)
leucine-rich repeat 285..308 CDD:275380 5/40 (13%)
leucine-rich repeat 309..334 CDD:275380 6/24 (25%)
leucine-rich repeat 335..358 CDD:275380 7/26 (27%)
leucine-rich repeat 359..382 CDD:275380 8/45 (18%)
leucine-rich repeat 383..406 CDD:275380 5/22 (23%)
leucine-rich repeat 407..430 CDD:275380 5/28 (18%)
leucine-rich repeat 431..451 CDD:275380 7/20 (35%)
leucine-rich repeat 454..477 CDD:275380 5/25 (20%)
leucine-rich repeat 478..499 CDD:275380 5/22 (23%)
leucine-rich repeat 502..525 CDD:275380 7/42 (17%)
leucine-rich repeat 526..548 CDD:275380 3/21 (14%)
leucine-rich repeat 590..617 CDD:275380 4/42 (10%)
leucine-rich repeat 618..641 CDD:275380 3/25 (12%)
leucine-rich repeat 642..689 CDD:275380 15/68 (22%)
LRRCT 679..736 CDD:214507 15/61 (25%)
LRR <775..>920 CDD:443914
leucine-rich repeat 775..796 CDD:275380
leucine-rich repeat 797..817 CDD:275380
leucine-rich repeat 818..841 CDD:275380
leucine-rich repeat 842..865 CDD:275380
leucine-rich repeat 866..889 CDD:275380
leucine-rich repeat 890..911 CDD:275380
TIR 1045..1183 CDD:214587
AT1G56540NP_176047.1 PLN03210 11..1040 CDD:215633 190/876 (22%)
leucine-rich repeat 605..627 CDD:275380 7/29 (24%)
leucine-rich repeat 628..650 CDD:275380 2/21 (10%)
leucine-rich repeat 651..674 CDD:275380 8/22 (36%)
leucine-rich repeat 675..697 CDD:275380 8/31 (26%)
leucine-rich repeat 698..721 CDD:275380 4/22 (18%)
leucine-rich repeat 764..786 CDD:275380 3/21 (14%)
leucine-rich repeat 787..807 CDD:275380 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.

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