DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and RLP56

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_001330457.1 Gene:RLP56 / 834989 AraportID:AT5G49290 Length:947 Species:Arabidopsis thaliana


Alignment Length:1112 Identity:250/1112 - (22%)
Similarity:406/1112 - (36%) Gaps:387/1112 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 SELRIDACKLQRVPPN----AFEGL---------MSLKRLT-LESHNAVWGPGKTLELHGQSFQG 143
            ::.:.|.|:.:.:..|    ...||         :||..|: |.....|    ::|:|......|
plant    60 NDTKSDCCQWENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEV----RSLDLSNSRLNG 120

  Fly   144 LKELSELHLGDNNIRQLPEGVWCSMPSLQLLNLTQNRIRSA--EFLGFSEKLCAGS-ALSNANGA 205
            |.:..|   |..::|:|        .:||:||.:.|...::  .||..:..|...| ..:|..|.
plant   121 LVDDVE---GYKSLRRL--------RNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGP 174

  Fly   206 V-----SGGSELQTLDVSFNEL------RSLPDAWGASRLRRLQTLSLQHNNI-STLAPNALAGL 258
            :     ...:.|:.||:|.|.:      |..|      .|::|:.|.|..|.| |::....|..|
plant   175 IPLKELKNLTNLELLDLSGNRIDGSMPVREFP------YLKKLKALDLSSNGIYSSMEWQGLKNL 233

  Fly   259 SSLRVLNISYNHLVS-LPSEAFAGNKELRELHLQG-NDLYELPKGLLHRLEQLLVLDLSGNQLTS 321
            ::|.||::.||:... :|.|.|...|.|:||.|:| |.:.:||. ....|.:|..||||.||||.
plant   234 TNLEVLSLGYNYFDGPIPIEVFCEMKNLQELDLRGINFVGQLPL-CFGNLNKLRFLDLSSNQLTG 297

  Fly   322 HHVDNSTFAGLIRLIVLNLSNNA------------LTRI-----GSK----------TFKELYFL 359
            :  ...:|:.|..|..|:||:|:            ||::     .||          |::.|:.|
plant   298 N--IPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQL 360

  Fly   360 QILDMRNNSIGHIEEGAFLPLY--NLHTLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVES 422
            .:|.:|..|:..|..  || :|  |||.::|:.||:.                       .|:.:
plant   361 SVLVLRLCSLEKIPN--FL-MYQKNLHVVDLSGNRIS-----------------------GIIPT 399

  Fly   423 QAFRNCSDLKELDLSSNQLT--EVPEAVQDLSMLKTLDLGENQISEF-----------------K 468
            ....|..:|:.|.|.:|..|  ::|.:|.:   |:.||..||.|...                 .
plant   400 WLLENNPELEVLQLKNNSFTIFQMPTSVHN---LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGS 461

  Fly   469 NNTFR-----NLNQLTGLRLIDNRIGNITVGMFQDLPR--------LSVLNLAKNRIQSIERGAF 520
            ||.|:     ::.::..:..:|....|::    .:||:        ||:|.|:.|:..    |.|
plant   462 NNGFQGNFPSSMGEMYNISFLDLSYNNLS----GELPQSFVSSCFSLSILQLSHNKFS----GHF 518

  Fly   521 ----DKNTEIEAIRLDKNFLTDINGI-FATLASLLWLNLSENH--------LVWFDYAFIPSNLK 572
                ...|.:..:|::.|..|...|: ..||..|..|::|.|.        |:.|:|      |.
plant   519 LPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEY------LN 577

  Fly   573 WLDIHGNYIEALGNYYKLQEEIRVTTLDASHNRITEIGAMSVPNSIEL---LFI-NNNIIGQIQA 633
            :||:.||.:.                           ||:  |:.:.|   ||: |||..|    
plant   578 FLDLSGNLLS---------------------------GAL--PSHVSLDNVLFLHNNNFTG---- 609

  Fly   634 NTFVDKTRLARVDLYANVLSKISLNALRVAPVSAEKPVPEFYLGGNPFECDCSMEWLQRINNLTT 698
                                                |:|:.:||        |::.|...||..:
plant   610 ------------------------------------PIPDTFLG--------SIQILDLRNNKLS 630

  Fly   699 RQHPHVVDLGNIECLMPHSRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVICPGNC 763
            ...|..||..:|..|:....|                 ...:.|.|  .||:.:.....:.....
plant   631 GNIPQFVDTQDISFLLLRGNS-----------------LTGYIPST--LCEFSKMRLLDLSDNKL 676

  Fly   764 -----SCFHDATWATNIVDCGRQDLAALPNRIPQDVSDLY-----------------------LD 800
                 |||::.::.          ||.     .:::::.|                       ||
plant   677 NGFIPSCFNNLSFG----------LAR-----KEEITNYYVAVALESFYLGFYKSTFVVENFRLD 726

  Fly   801 GNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEFRSLGL 865
            .:|..|::|...|.:|     |.:.........|:|..:..   |.|.:|:|:.:...|...|..
plant   727 YSNYFEIDVKFATKQR-----YDSYIGAFQFSEGTLNSMYG---LDLSSNELSGVIPAELGDLFK 783

  Fly   866 LRELYL-HNNMLTHISNATFEPLVSLEVLRLDNNRL-SSLPHLQYRHSLQGLTLGRNAWSCRCQQ 928
            ||.|.| ||.:.:||.: :|..|..:|.|.|..|.| .|:|     |.|..||            
plant   784 LRALNLSHNFLSSHIPD-SFSKLQDIESLDLSYNMLQGSIP-----HQLTNLT------------ 830

  Fly   929 LRELAQF-VSDNAM--VVRDAHDIYCLDAGIKRELELIGN-LANGPDCSDLLDASASNISSSQDL 989
              .||.| ||.|.:  ::.........|     |...:|| |..||.    .|.|.....:|::.
plant   831 --SLAIFNVSYNNLSGIIPQGKQFNTFD-----ENSYLGNPLLCGPP----TDTSCETKKNSEEN 884

  Fly   990 A-GGYRLPLLAAVLVLIF-----------LVVVLIIVFVFRESVRMWLFAHYGVRVCEPRFEDAG 1042
            | ||.......|:.:|:|           |:.:|:::.|.....|.||                 
plant   885 ANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWL----------------- 932

  Fly  1043 KLYDAII 1049
            :|.||.|
plant   933 RLVDAFI 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380 5/34 (15%)
LRR_8 115..181 CDD:404697 18/66 (27%)
leucine-rich repeat 116..146 CDD:275380 8/30 (27%)
leucine-rich repeat 147..170 CDD:275380 4/22 (18%)
leucine-rich repeat 171..201 CDD:275380 9/32 (28%)
LRR 210..592 CDD:443914 118/464 (25%)
leucine-rich repeat 212..236 CDD:275380 8/29 (28%)
leucine-rich repeat 237..260 CDD:275380 8/23 (35%)
leucine-rich repeat 261..284 CDD:275380 8/23 (35%)
leucine-rich repeat 285..308 CDD:275380 9/23 (39%)
leucine-rich repeat 309..334 CDD:275380 11/24 (46%)
leucine-rich repeat 335..358 CDD:275380 11/49 (22%)
leucine-rich repeat 359..382 CDD:275380 8/24 (33%)
leucine-rich repeat 383..406 CDD:275380 5/22 (23%)
leucine-rich repeat 407..430 CDD:275380 2/22 (9%)
leucine-rich repeat 431..451 CDD:275380 7/21 (33%)
leucine-rich repeat 454..477 CDD:275380 9/44 (20%)
leucine-rich repeat 478..499 CDD:275380 2/20 (10%)
leucine-rich repeat 502..525 CDD:275380 7/26 (27%)
leucine-rich repeat 526..548 CDD:275380 6/22 (27%)
leucine-rich repeat 590..617 CDD:275380 3/26 (12%)
leucine-rich repeat 618..641 CDD:275380 7/26 (27%)
leucine-rich repeat 642..689 CDD:275380 5/46 (11%)
LRRCT 679..736 CDD:214507 10/56 (18%)
LRR <775..>920 CDD:443914 40/169 (24%)
leucine-rich repeat 775..796 CDD:275380 2/20 (10%)
leucine-rich repeat 797..817 CDD:275380 7/42 (17%)
leucine-rich repeat 818..841 CDD:275380 3/22 (14%)
leucine-rich repeat 842..865 CDD:275380 6/22 (27%)
leucine-rich repeat 866..889 CDD:275380 10/23 (43%)
leucine-rich repeat 890..911 CDD:275380 7/21 (33%)
TIR 1045..1183 CDD:214587 3/5 (60%)
RLP56NP_001330457.1 LRRNT_2 31..75 CDD:462411 2/14 (14%)
PLN00113 55..>868 CDD:215061 229/1018 (22%)
leucine-rich repeat 81..107 CDD:275380 6/25 (24%)
leucine-rich repeat 108..136 CDD:275380 9/42 (21%)
leucine-rich repeat 137..160 CDD:275380 7/22 (32%)
leucine-rich repeat 161..185 CDD:275380 4/23 (17%)
leucine-rich repeat 186..210 CDD:275380 8/29 (28%)
leucine-rich repeat 211..235 CDD:275380 8/23 (35%)
leucine-rich repeat 236..260 CDD:275380 8/23 (35%)
leucine-rich repeat 261..284 CDD:275380 9/23 (39%)
leucine-rich repeat 285..308 CDD:275380 11/24 (46%)
leucine-rich repeat 309..330 CDD:275380 5/20 (25%)
leucine-rich repeat 335..382 CDD:275380 12/49 (24%)
leucine-rich repeat 383..401 CDD:275380 6/40 (15%)
leucine-rich repeat 408..429 CDD:275380 7/20 (35%)
leucine-rich repeat 430..454 CDD:275380 6/23 (26%)
leucine-rich repeat 455..478 CDD:275380 3/22 (14%)
leucine-rich repeat 479..503 CDD:275380 4/27 (15%)
leucine-rich repeat 504..527 CDD:275380 7/26 (27%)
leucine-rich repeat 528..559 CDD:275380 8/30 (27%)
leucine-rich repeat 576..595 CDD:275380 8/47 (17%)
leucine-rich repeat 596..618 CDD:275380 11/69 (16%)
leucine-rich repeat 619..641 CDD:275380 6/21 (29%)
leucine-rich repeat 642..665 CDD:275380 7/41 (17%)
leucine-rich repeat 666..705 CDD:275380 6/53 (11%)
leucine-rich repeat 706..759 CDD:275380 10/57 (18%)
leucine-rich repeat 760..783 CDD:275380 6/25 (24%)
leucine-rich repeat 784..807 CDD:275380 10/23 (43%)
leucine-rich repeat 808..831 CDD:275380 11/41 (27%)
Blue background indicates that the domain is not in the aligned region.

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