DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and GSO2

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_199283.1 Gene:GSO2 / 834499 AraportID:AT5G44700 Length:1252 Species:Arabidopsis thaliana


Alignment Length:1125 Identity:256/1125 - (22%)
Similarity:426/1125 - (37%) Gaps:315/1125 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 CNWQYGLTTMDIRCSVRAL----ESGTGTPLDLQVAEAAGRLDLQCSQELLHASELAPGLFRQLQ 90
            |||. |:|     |..|.:    .||.|  |...::.:.||.:     .|:|             
plant    61 CNWT-GVT-----CGGREIIGLNLSGLG--LTGSISPSIGRFN-----NLIH------------- 99

  Fly    91 KLSELRIDACKLQRVPPNAFEGLMSLKRLTLESHNAVWGPGKTLELHGQSFQG--------LKEL 147
                :.:.:.:|....|.....|.|    :|||          |.|......|        |..|
plant   100 ----IDLSSNRLVGPIPTTLSNLSS----SLES----------LHLFSNLLSGDIPSQLGSLVNL 146

  Fly   148 SELHLGDNNIR-QLPEGVWCSMPSLQLLNLTQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSE 211
            ..|.||||.:. .:|| .:.::.:||:|.|...|:...                           
plant   147 KSLKLGDNELNGTIPE-TFGNLVNLQMLALASCRLTGL--------------------------- 183

  Fly   212 LQTLDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHL-VSLP 275
                         :|..:|  ||.:||||.||.|.:....|..:...:||.:...::|.| .|||
plant   184 -------------IPSRFG--RLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLP 233

  Fly   276 SEAFAGNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGLIRLIVLNL 340
            :|                         |:||:.|..|:|..|..:..  ..|....|:.:..|||
plant   234 AE-------------------------LNRLKNLQTLNLGDNSFSGE--IPSQLGDLVSIQYLNL 271

  Fly   341 SNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLH-TLDNRIFNGL 404
            ..|.|..:..|...||..||.||:.:|::..:....|..:..|..|.||:|||. :|...|.:..
plant   272 IGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNN 336

  Fly   405 YVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLT-EVPEAVQDLSMLKTLDLGENQISEFK 468
            ..|.:|.|:...:|........||..||.||||:|.|| ::|:::..|..|..|.|..|.:....
plant   337 TSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTL 401

  Fly   469 NNTFRNLNQLTGLRLIDNRI-GNI--TVGMFQDLPRLSVLNLAKNRIQS---IERGAFDKNTEIE 527
            :::..||..|....|..|.: |.:  .:|.   |.:|.::.|.:||...   :|.|   ..|.::
plant   402 SSSISNLTNLQEFTLYHNNLEGKVPKEIGF---LGKLEIMYLYENRFSGEMPVEIG---NCTRLQ 460

  Fly   528 AIRLDKNFLT-DINGIFATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIEALGNYYKLQ 591
            .|....|.|: :|......|..|..|:|.||.||                 ||...:|||.::: 
plant   461 EIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELV-----------------GNIPASLGNCHQM- 507

  Fly   592 EEIRVTTLDASHNRITEIGAMSVPNS------IELLFINNNIIGQIQANTFVDKTRLARVDLYAN 650
                 |.:|.:.|:::.    |:|:|      :||..|.||.:.....::.::...|.|::..:|
plant   508 -----TVIDLADNQLSG----SIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSN 563

  Fly   651 VLSKISLNALRVAPVSAEKPVPEFYLGGNPFECDCSMEW-----LQRI---NNLTTRQHPHVVDL 707
            ..:.      .::|:........|.:..|.||.|..:|.     |.|:   .|..|.:.|..  .
plant   564 KFNG------SISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRT--F 620

  Fly   708 GNIE--CLMPHSRSAPLRPLASLSASDF-VCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDA 769
            |.|.  .|:..||::    |:.:...:. :||..:|       .:........:.|         
plant   621 GKISELSLLDISRNS----LSGIIPVELGLCKKLTH-------IDLNNNYLSGVIP--------- 665

  Fly   770 TWATNIVDCGRQDLA------ALPNRI--PQDVSDLYLDGNNM----PELEVGHLTGRRNLRALY 822
            ||...:...|...|:      :||..|  ..::..|:||||::    |: |:|:|   :.|.||.
plant   666 TWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQ-EIGNL---QALNALN 726

  Fly   823 LNASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEFRSLGLLREL-----YLHNNMLTHISNA 882
            |..:.|......::.:|..|..|.|..|.||.....|   :|.|::|     ..:||....|. :
plant   727 LEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVE---IGQLQDLQSALDLSYNNFTGRIP-S 787

  Fly   883 TFEPLVSLEVLRLDNNRL-SSLP-HLQYRHSLQGLTLGRNAWSCRCQQLRELAQFVSD----NAM 941
            |...|..||.|.|.:|:| ..:| .:....||..|.|..|....:.:  ::.:::.:|    ||.
plant   788 TISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK--KQFSRWQADAFVGNAG 850

  Fly   942 VVRDAHDIYCLDAGIKRELELIGNLANGPDCSDLLDASASNISSSQDLAGGYRLPLLAAVLVLIF 1006
            :...... :|..||.|.:..|      .|....::.|.:|                |||:.::  
plant   851 LCGSPLS-HCNRAGSKNQRSL------SPKTVVIISAISS----------------LAAIALM-- 890

  Fly  1007 LVVVLIIVFVFRESVRMW--------------------LFAHYGVRVCEPRFED----------- 1040
               ||:|:..|:::..::                    ||::.|.: .:.:::|           
plant   891 ---VLVIILFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGGAK-SDIKWDDIMEATHYLNEE 951

  Fly  1041 -------AGKLYDAIILHSE 1053
                   :||:|.|.:.:.|
plant   952 FMIGSGGSGKVYKAELKNGE 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 3/24 (13%)
leucine-rich repeat 92..115 CDD:275380 3/22 (14%)
LRR_8 115..181 CDD:404697 20/74 (27%)
leucine-rich repeat 116..146 CDD:275380 7/37 (19%)
leucine-rich repeat 147..170 CDD:275380 8/23 (35%)
leucine-rich repeat 171..201 CDD:275380 5/29 (17%)
LRR 210..592 CDD:443914 105/391 (27%)
leucine-rich repeat 212..236 CDD:275380 4/23 (17%)
leucine-rich repeat 237..260 CDD:275380 8/22 (36%)
leucine-rich repeat 261..284 CDD:275380 7/23 (30%)
leucine-rich repeat 285..308 CDD:275380 3/22 (14%)
leucine-rich repeat 309..334 CDD:275380 6/24 (25%)
leucine-rich repeat 335..358 CDD:275380 8/22 (36%)
leucine-rich repeat 359..382 CDD:275380 6/22 (27%)
leucine-rich repeat 383..406 CDD:275380 9/23 (39%)
leucine-rich repeat 407..430 CDD:275380 6/22 (27%)
leucine-rich repeat 431..451 CDD:275380 10/20 (50%)
leucine-rich repeat 454..477 CDD:275380 6/22 (27%)
leucine-rich repeat 478..499 CDD:275380 5/23 (22%)
leucine-rich repeat 502..525 CDD:275380 6/25 (24%)
leucine-rich repeat 526..548 CDD:275380 5/22 (23%)
leucine-rich repeat 590..617 CDD:275380 5/26 (19%)
leucine-rich repeat 618..641 CDD:275380 5/22 (23%)
leucine-rich repeat 642..689 CDD:275380 9/46 (20%)
LRRCT 679..736 CDD:214507 16/67 (24%)
LRR <775..>920 CDD:443914 46/163 (28%)
leucine-rich repeat 775..796 CDD:275380 5/28 (18%)
leucine-rich repeat 797..817 CDD:275380 9/23 (39%)
leucine-rich repeat 818..841 CDD:275380 6/22 (27%)
leucine-rich repeat 842..865 CDD:275380 7/22 (32%)
leucine-rich repeat 866..889 CDD:275380 7/27 (26%)
leucine-rich repeat 890..911 CDD:275380 7/22 (32%)
TIR 1045..1183 CDD:214587 3/9 (33%)
GSO2NP_199283.1 PLN00113 7..>528 CDD:215061 150/613 (24%)
leucine-rich repeat 76..96 CDD:275380 6/26 (23%)
leucine-rich repeat 146..169 CDD:275380 8/23 (35%)
leucine-rich repeat 170..193 CDD:275380 9/64 (14%)
leucine-rich repeat 194..241 CDD:275380 19/71 (27%)
leucine-rich repeat 242..265 CDD:275380 6/24 (25%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
PLN00113 285..1232 CDD:215061 182/787 (23%)
leucine-rich repeat 290..313 CDD:275380 6/22 (27%)
leucine-rich repeat 314..338 CDD:275380 9/23 (39%)
leucine-rich repeat 339..362 CDD:275380 6/22 (27%)
leucine-rich repeat 363..386 CDD:275380 11/22 (50%)
leucine-rich repeat 387..410 CDD:275380 6/22 (27%)
leucine-rich repeat 411..434 CDD:275380 6/25 (24%)
leucine-rich repeat 435..458 CDD:275380 6/25 (24%)
leucine-rich repeat 459..482 CDD:275380 5/22 (23%)
leucine-rich repeat 483..506 CDD:275380 12/39 (31%)
leucine-rich repeat 507..528 CDD:275380 6/30 (20%)
leucine-rich repeat 531..554 CDD:275380 5/22 (23%)
leucine-rich repeat 555..571 CDD:275380 3/21 (14%)
leucine-rich repeat 604..625 CDD:275380 6/22 (27%)
leucine-rich repeat 626..649 CDD:275380 5/26 (19%)
leucine-rich repeat 650..673 CDD:275380 4/38 (11%)
leucine-rich repeat 674..697 CDD:275380 5/22 (23%)
leucine-rich repeat 698..721 CDD:275380 9/26 (35%)
leucine-rich repeat 722..745 CDD:275380 6/22 (27%)
leucine-rich repeat 746..769 CDD:275380 9/25 (36%)
leucine-rich repeat 770..794 CDD:275380 6/24 (25%)
leucine-rich repeat 795..818 CDD:275380 7/22 (32%)
leucine-rich repeat 819..839 CDD:275380 4/21 (19%)

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