DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and AT5G41550

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_198970.1 Gene:AT5G41550 / 834157 AraportID:AT5G41550 Length:1085 Species:Arabidopsis thaliana


Alignment Length:1265 Identity:231/1265 - (18%)
Similarity:426/1265 - (33%) Gaps:438/1265 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 AFEGLMSLKRLTLESHNAVWGPGKTLELHGQSFQGLKELSELHLGDNNIRQLPEGVWCSMPSLQL 173
            |.:|:.:.|...:|..|.: || :.:....:|...:..||:.:...:         ||....:::
plant    37 ASKGITTFKDQEIEKGNTI-GP-ELVNAIRESRVSIVLLSKKYASSS---------WCLDELVEI 90

  Fly   174 LNLTQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSELQTL--DVSFNELRSLPDAWGASRLRR 236
            |...:::                            |..:.|:  ||..:.:|.....:|::.::.
plant    91 LKCKEDQ----------------------------GQIVMTIFYDVDPSSVRKQKGDFGSTFMKT 127

  Fly   237 LQTLSLQHNNISTLAPNALAGLSSLRVLN--------------ISYNHLVSLPSEAFAGNKELRE 287
            .:..|.:.....|.|...:|.:.....||              :| ..|...||..|.|...| |
plant   128 CEGKSEEVKQRWTKALTHVANIKGEHSLNWANEADMIQKIATDVS-TKLSVTPSRDFEGMVGL-E 190

  Fly   288 LHL---------QGNDLYEL----PKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGLIRLIVLN 339
            .||         :|:|:..:    |.|    :.:..:.....|||      :|:|.  ::..:.|
plant   191 AHLTKLNSLLCFEGDDVKMIGIWGPAG----IGKSTIARALYNQL------SSSFQ--LKCFMGN 243

  Fly   340 LSNNALTRIG------SKTFKELYFLQIL---DMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHT 395
            |..:..:.:|      .|:.::|...:||   |||.:::..|:|                   ..
plant   244 LKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKE-------------------WL 289

  Fly   396 LDNRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQL------TEVPEAVQDLSML 454
            .|.|:   |.:|.                  :..||::|::.:.:|      :.:..|.:|..:|
plant   290 QDQRV---LIILD------------------DVDDLEQLEVLAKELSWFGSGSRIIVATEDKKIL 333

  Fly   455 KTLDLGENQI-----------------SEFKNNT----FRNLNQLTGLRLIDNRIGNITVGMF-- 496
            |  :.|.|.|                 |.||.::    |..|     .:.:.:..||:.:|:.  
plant   334 K--EHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEEL-----AKKVVHLCGNLPLGLSIV 391

  Fly   497 -------------QDLPRL---------SVLNLAKNRIQSIERGAF--------DKNTEIEAIRL 531
                         ..|||:         |:|.:...|:....:..|        .::.:...:.|
plant   392 GSSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVDYVTVML 456

  Fly   532 -DKNFLTDINGIFATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIEALGNYYKLQ---- 591
             |.|.  |:.....|||...::::|.|              .|:.:|.:.::.||....|:    
plant   457 ADSNL--DVRNGLKTLADKCFVHISIN--------------GWIVMHHHLLQQLGRQIVLEQSDE 505

  Fly   592 ----------EEIRVTTLDASHNRITEIGAMSVPNSIELLFINNNIIGQIQAN--TFVDKTRLAR 644
                      ||||....|       |.|..||..    :..|.:.||::..:  .|.....|..
plant   506 PGKRQFLIEAEEIRAVLTD-------ETGTGSVIG----ISYNTSNIGEVSVSKGAFEGMRNLRF 559

  Fly   645 VDLYANVLS-KISLNALRVAPVSAEKPVPEFYLGGNPFECDCSMEWLQRI----------NNLTT 698
            :.::..:.| |.:|.            :||            .||:|..:          .:|.|
plant   560 LRIFNYLFSGKCTLQ------------IPE------------DMEYLPPLRLLHWDRYPRKSLPT 600

  Fly   699 RQHPHVVDLGNIECLMPHSRSAPL----RPLASLSASDFVCKYE-SHCPPTCHCCEYE-----QC 753
            :..|..:    :|..||||....|    :||.::.:.|...... ...|...:....|     .|
plant   601 KFQPERL----LELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEIPNLSNATNLETLNLTHC 661

  Fly   754 ECEVICPGNCSCFHDATWATNIVDCGRQDLAALPNRIPQDVSDLYLDGNNMPELEVGHLTGRRNL 818
            :..|..|.:.|..|.   ...:...|.:.|..:|..|            |:..|||..:.....|
plant   662 KTLVELPSSISNLHK---LKKLKMSGCEKLRVIPTNI------------NLASLEVVRMNYCSRL 711

  Fly   819 RALYLNASNLMTLQNGSLAQLVNLRVLHLEN---------NKLTALE-GTEFRSLGLLR------ 867
            |.....:||:.||..|:         ..:||         ::|..|| |:  |||.:|.      
plant   712 RRFPDISSNIKTLSVGN---------TKIENFPPSVAGSWSRLARLEIGS--RSLKILTHAPQSI 765

  Fly   868 -ELYLHNNMLTHISNATFEPLVSLEVLRLDNNRLSSLPHL-QYRHSLQGLTLGRNAWSC------ 924
             .|.|.|:.:..|.:........:|::..:..:|.::|.| .:..||       ||..|      
plant   766 ISLNLSNSDIRRIPDCVISLPYLVELIVENCRKLVTIPALPPWLESL-------NANKCASLKRV 823

  Fly   925 -------------RCQQLRELAQFVSDNAMVVRDAHDIY-CLDAGIKREL------ELIGNLANG 969
                         .|.:|.|.|:    ..::::...|.| ||..   :|:      :.:||....
plant   824 CCSFGNPTILTFYNCLKLDEEAR----RGIIMQQPVDEYICLPG---KEIPAEFSHKAVGNSITI 881

  Fly   970 PDCSDLLDASASNISSSQDLA-------GGYRLPLLAAVLVLIFLVVVLIIVFVFRESVRMWLFA 1027
            |      .|..:.::||:..|       .|||...::.::                 |.:    |
plant   882 P------LAPGTFLASSRYKACFVILPVTGYRCHSISCIV-----------------SSK----A 919

  Fly  1028 HYGVRVCEPRFEDAGKLYD-------AIILHSEKDYEFVCRN-IAAELEHGRPPFRLCIQQRDLP 1084
            .:.:|:|     |..:|.|       ..|.|....|:   || |.:|:..   .|...|.:....
plant   920 GFAMRIC-----DLARLSDWSPGTEHLFIFHGRLVYQ---RNMILSEIIF---KFNCVINEFSDD 973

  Fly  1085 PQASHLQLVEGARASRKIILVLTRNLLATEWNRIEFRNAFHE----SLRGLAQKLVIIEETSVSA 1145
            |...::.:..|.    :|:....:...:::.:..|.:::..|    .....:.:|.|.|..|.|:
plant   974 PDLDNMIIECGV----QIMTEEAKGSSSSDVDNFETKSSSSELENFETESSSSELDIFETESSSS 1034

  Fly  1146 EA---EDVAELSPYLKSVPSNRLLTCDRYF 1172
            ||   ||.......::|..:::..:|..:|
plant  1035 EADYYEDEGLKFSQVESTKTSKHTSCWSWF 1064

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380 2/5 (40%)
LRR_8 115..181 CDD:404697 11/65 (17%)
leucine-rich repeat 116..146 CDD:275380 6/29 (21%)
leucine-rich repeat 147..170 CDD:275380 4/22 (18%)
leucine-rich repeat 171..201 CDD:275380 1/29 (3%)
LRR 210..592 CDD:443914 86/493 (17%)
leucine-rich repeat 212..236 CDD:275380 5/25 (20%)
leucine-rich repeat 237..260 CDD:275380 4/22 (18%)
leucine-rich repeat 261..284 CDD:275380 8/36 (22%)
leucine-rich repeat 285..308 CDD:275380 8/35 (23%)
leucine-rich repeat 309..334 CDD:275380 5/24 (21%)
leucine-rich repeat 335..358 CDD:275380 5/28 (18%)
leucine-rich repeat 359..382 CDD:275380 7/25 (28%)
leucine-rich repeat 383..406 CDD:275380 3/22 (14%)
leucine-rich repeat 407..430 CDD:275380 1/22 (5%)
leucine-rich repeat 431..451 CDD:275380 4/25 (16%)
leucine-rich repeat 454..477 CDD:275380 10/43 (23%)
leucine-rich repeat 478..499 CDD:275380 3/35 (9%)
leucine-rich repeat 502..525 CDD:275380 4/39 (10%)
leucine-rich repeat 526..548 CDD:275380 6/22 (27%)
leucine-rich repeat 590..617 CDD:275380 10/40 (25%)
leucine-rich repeat 618..641 CDD:275380 4/24 (17%)
leucine-rich repeat 642..689 CDD:275380 7/47 (15%)
LRRCT 679..736 CDD:214507 15/70 (21%)
LRR <775..>920 CDD:443914 35/162 (22%)
leucine-rich repeat 775..796 CDD:275380 4/20 (20%)
leucine-rich repeat 797..817 CDD:275380 4/19 (21%)
leucine-rich repeat 818..841 CDD:275380 7/22 (32%)
leucine-rich repeat 842..865 CDD:275380 9/32 (28%)
leucine-rich repeat 866..889 CDD:275380 5/29 (17%)
leucine-rich repeat 890..911 CDD:275380 4/21 (19%)
TIR 1045..1183 CDD:214587 27/143 (19%)
AT5G41550NP_198970.1 PLN03210 1..900 CDD:215633 195/1063 (18%)
leucine-rich repeat 557..584 CDD:275380 9/50 (18%)
leucine-rich repeat 585..606 CDD:275380 3/20 (15%)
leucine-rich repeat 607..629 CDD:275380 8/25 (32%)
leucine-rich repeat 630..652 CDD:275380 2/21 (10%)
leucine-rich repeat 653..676 CDD:275380 5/22 (23%)
leucine-rich repeat 677..699 CDD:275380 5/33 (15%)
leucine-rich repeat 700..720 CDD:275380 5/19 (26%)
leucine-rich repeat 721..744 CDD:275380 5/31 (16%)
leucine-rich repeat 765..787 CDD:275380 4/21 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.