DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and RLP50

DIOPT Version :9

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_567412.1 Gene:RLP50 / 827026 AraportID:AT4G13920 Length:891 Species:Arabidopsis thaliana


Alignment Length:979 Identity:222/979 - (22%)
Similarity:351/979 - (35%) Gaps:294/979 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SSIITIIAVAACL----------------------LLLVADAHAQQQ-----CNWQYGLTTMDIR 42
            |:.|.:||...||                      |:|:....|:.:     |:|.      .|.
plant    15 SNSILVIAKDLCLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWRNNTDCCSWG------GIS 73

  Fly    43 CSVRALESGTGTPLDLQVAEAAGRLDLQCSQELLHASELAPGLFRQLQKLSELRIDACKLQRVPP 107
            |..:   :|....|||..::..|||....|            ||| ||.|..|.:....|....|
plant    74 CDPK---TGVVVELDLGNSDLNGRLRSNSS------------LFR-LQHLQSLDLSYNDLSCTLP 122

  Fly   108 NAFEGLMSLKRLTLESHNAVWGPGKTLELHGQ---SFQGLKELSELHLGDNNIRQLPEGVWCSMP 169
            ::......|:.|.|...|          |.|:   |.:.|..|::|.|..|:  .|...:..||.
plant   123 DSSGNFKYLRVLNLLGCN----------LFGEIPTSLRSLSYLTDLDLSYND--DLTGEILDSMG 175

  Fly   170 SLQLLNLTQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSELQTLDVSFNELR-SLPDAWGASR 233
            :|:.|     |:.|.....|:.|:  .|:|.|.       :.|..||:|:|... .|||:.|  .
plant   176 NLKHL-----RVLSLTSCKFTGKI--PSSLGNL-------TYLTDLDLSWNYFTGELPDSMG--N 224

  Fly   234 LRRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVSLPSEAFAGNKELRELHLQGNDLYEL 298
            |:.|:.|:|...|.....|.:|..||:|..|:||.|...|...::.:....|.:..|        
plant   225 LKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQL-------- 281

  Fly   299 PKGLLHRLEQLLVLDLSGNQ--------------LTSHHVDNSTFAGLI--------RLIVLNLS 341
               :|..|..|..:|||.||              |.:..:..::|:|.|        .||.|:|.
plant   282 ---MLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLG 343

  Fly   342 NNALT---RIGS----KTFKELYFLQILDMRNNSIGHIEEGAFLPLYNLHTLNLA-ENRLHTLDN 398
            .|..:   :||:    ...:|||..:     ||..|.|.. :.|.|..|..|:|: .:....:|.
plant   344 TNDFSGPLKIGNISSPSNLQELYIGE-----NNINGPIPR-SILKLVGLSALSLSFWDTGGIVDF 402

  Fly   399 RIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLTEVPEAVQDLSMLKTLDLGENQ 463
            .||..|..|..|.|:.  :::..|.:....|.:..|.|||..:::.|:.:::.:.|..||:..||
plant   403 SIFLQLKSLRSLDLSG--INLNISSSHHLPSHMMHLILSSCNISQFPKFLENQTSLYHLDISANQ 465

  Fly   464 ISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIERGAFDKNTEIEA 528
            |.                       |.:...::: ||.|..:|:|:|        ||...     
plant   466 IE-----------------------GQVPEWLWR-LPTLRYVNIAQN--------AFSGE----- 493

  Fly   529 IRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIEALGNYYKLQEE 593
                                   |.:..|.:    |:||.|:.|:   .|....|          
plant   494 -----------------------LTMLPNPI----YSFIASDNKF---SGEIPRA---------- 518

  Fly   594 IRVTTLDASHNRITEIGAMSVPNSIELLFINNNIIGQIQANTFVDKTRLARVDLYANVLSKI--- 655
                        :.|||.        |:..|||..|.|.....:....|:.:.|..|.||.:   
plant   519 ------------VCEIGT--------LVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPE 563

  Fly   656 -SLNA-LRVAPVSAEKPVPEFYLGGNPFE-CDCSMEWLQRINNLTTRQHPHVVDLGNIECLMPH- 716
             ||:. ||...|.:.:...:|     |.. .:||  :||.:|          |:...|....|. 
plant   564 ESLHGYLRSLDVGSNRLSGQF-----PKSLINCS--YLQFLN----------VEENRINDTFPSW 611

  Fly   717 SRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDCGRQ 781
            .:|.|...|..|.:::|      |.|              :..||:...|.    .....|....
plant   612 LKSLPNLQLLVLRSNEF------HGP--------------IFSPGDSLSFS----KLRFFDISEN 652

  Fly   782 DLAALPNRIPQD------VSDLYLD-GNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQL 839
            ..:.:   :|.|      |...::| .:|.|...|.........:::.|....|.....||..::
plant   653 RFSGV---LPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQESFHKSVVLTIKGLNMELVGSGFEI 714

  Fly   840 VNLRVLHLENNKLTALEGTEFRSLGLLRELY---LHNNMLTHISNATFEPLVSLEVLRLDNNRLS 901
              .:.:.:..|:   |||....|:|:|:||.   :.||..|.....:...|.:|:.|.|..||||
plant   715 --YKTIDVSGNR---LEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLS 774

  Fly   902 -SLP 904
             |:|
plant   775 GSIP 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 7/24 (29%)
leucine-rich repeat 92..115 CDD:275380 4/22 (18%)
LRR_8 115..181 CDD:290566 17/68 (25%)
leucine-rich repeat 116..146 CDD:275380 8/32 (25%)
leucine-rich repeat 147..170 CDD:275380 7/22 (32%)
leucine-rich repeat 171..201 CDD:275380 8/29 (28%)
LRR_RI 210..464 CDD:238064 75/284 (26%)
leucine-rich repeat 212..236 CDD:275380 10/24 (42%)
LRR_8 235..295 CDD:290566 16/59 (27%)
leucine-rich repeat 237..260 CDD:275380 7/22 (32%)
leucine-rich repeat 261..284 CDD:275380 6/22 (27%)
LRR_8 283..345 CDD:290566 19/83 (23%)
leucine-rich repeat 285..308 CDD:275380 4/22 (18%)
leucine-rich repeat 309..334 CDD:275380 10/46 (22%)
LRR_8 334..393 CDD:290566 19/66 (29%)
leucine-rich repeat 335..358 CDD:275380 9/29 (31%)
leucine-rich repeat 359..382 CDD:275380 6/22 (27%)
LRR_8 382..441 CDD:290566 16/59 (27%)
leucine-rich repeat 383..406 CDD:275380 7/23 (30%)
leucine-rich repeat 407..430 CDD:275380 4/22 (18%)
LRR_8 431..488 CDD:290566 11/56 (20%)
leucine-rich repeat 431..451 CDD:275380 5/19 (26%)
leucine-rich repeat 454..477 CDD:275380 6/22 (27%)
LRR_8 477..559 CDD:290566 11/81 (14%)
leucine-rich repeat 478..499 CDD:275380 1/20 (5%)
leucine-rich repeat 502..525 CDD:275380 6/22 (27%)
leucine-rich repeat 526..548 CDD:275380 0/21 (0%)
leucine-rich repeat 590..617 CDD:275380 3/26 (12%)
leucine-rich repeat 618..641 CDD:275380 6/22 (27%)
leucine-rich repeat 642..689 CDD:275380 14/52 (27%)
LRRCT 679..736 CDD:214507 14/58 (24%)
leucine-rich repeat 775..796 CDD:275380 4/26 (15%)
LRR_8 797..852 CDD:290566 9/55 (16%)
leucine-rich repeat 797..817 CDD:275380 4/20 (20%)
leucine-rich repeat 818..841 CDD:275380 4/22 (18%)
LRR_8 841..900 CDD:290566 17/61 (28%)
leucine-rich repeat 842..865 CDD:275380 5/22 (23%)
LRR_4 866..907 CDD:289563 16/43 (37%)
leucine-rich repeat 866..889 CDD:275380 7/25 (28%)
leucine-rich repeat 890..911 CDD:275380 9/16 (56%)
TIR 1045..1183 CDD:214587
RLP50NP_567412.1 leucine-rich repeat 494..517 CDD:275380 8/29 (28%)
leucine-rich repeat 524..546 CDD:275380 6/29 (21%)
leucine-rich repeat 547..569 CDD:275380 7/21 (33%)
leucine-rich repeat 570..593 CDD:275380 7/29 (24%)
leucine-rich repeat 594..617 CDD:275380 7/32 (22%)
leucine-rich repeat 618..643 CDD:275380 8/48 (17%)
leucine-rich repeat 644..705 CDD:275380 10/63 (16%)
leucine-rich repeat 707..738 CDD:275380 9/35 (26%)
leucine-rich repeat 739..762 CDD:275380 5/22 (23%)
leucine-rich repeat 763..786 CDD:275380 9/16 (56%)
PLN00113 1..>823 CDD:331614 222/979 (23%)
leucine-rich repeat 81..94 CDD:275381 3/12 (25%)
leucine-rich repeat 107..130 CDD:275380 4/22 (18%)
leucine-rich repeat 131..154 CDD:275380 8/32 (25%)
leucine-rich repeat 155..179 CDD:275380 8/25 (32%)
leucine-rich repeat 180..203 CDD:275380 8/36 (22%)
leucine-rich repeat 204..227 CDD:275380 10/24 (42%)
leucine-rich repeat 228..251 CDD:275380 7/22 (32%)
leucine-rich repeat 252..288 CDD:275380 10/46 (22%)
leucine-rich repeat 289..312 CDD:275380 6/22 (27%)
leucine-rich repeat 313..336 CDD:275380 4/22 (18%)
PLN00113 <355..>418 CDD:331614 19/68 (28%)
leucine-rich repeat 362..385 CDD:275380 9/28 (32%)
leucine-rich repeat 386..410 CDD:275380 7/23 (30%)
leucine-rich repeat 433..455 CDD:275380 5/21 (24%)
leucine-rich repeat 456..479 CDD:275380 8/46 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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